hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14423148/chunk_1/iprscan-20080501-14423148.nocrc
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Query sequence: KIAA1006
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00320                                                  74.7    1.2e-17   6

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/6      94   133 ..     1    46 []     3.8  1.2e+02
SM00320    2/6     135   174 ..     1    46 []    16.6      1.2
SM00320    3/6     233   272 ..     1    46 []    13.3      3.9
SM00320    4/6     276   313 ..     1    46 []    23.5     0.03
SM00320    5/6     433   512 ..     1    46 []    14.7      2.3
SM00320    6/6     537   577 ..     1    46 []     2.8  1.8e+02

Alignments of top-scoring domains:
SM00320: domain 1 of 6, from 94 to 133: score 3.8, E = 1.2e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       + +  + +g  +    t++af+p        ++la g + g ir+ 
    KIAA1006    94    FqICKTVRHGFPH--QPTALAFDPVQ------KILAIGTrTGAIRIL 132  

                   d<-*
                       
    KIAA1006   133 G    133  

SM00320: domain 2 of 6, from 135 to 174: score 16.6, E = 1.2
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  ++  +   +  +V+ ++f  +         l+s+s+D t++lW
    KIAA1006   135    PgVDCYCQHESGA--AVLQLQFLINE------GALVSASsDDTLHLW 173  

                   d<-*
                   +   
    KIAA1006   174 N    174  

SM00320: domain 3 of 6, from 233 to 272: score 13.3, E = 3.9
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   l+t + H g  pV +++ sp +     +  l+ g ++gt+ +W
    KIAA1006   233    KaIELSTKT-HPG--PVVHLSDSPRD-----EGKLLIGYeNGTVVFW 271  

                   d<-*
                   d   
    KIAA1006   272 D    272  

SM00320: domain 4 of 6, from 276 to 313: score 23.5, E = 0.03
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++  lr++   +   +++s+++++ g      +++ ++ +Dg++ lW
    KIAA1006   276    KrAELRVYY--DE--AIHSIDWHHEG------KQFMCSHsDGSLTLW 312  

                   d<-*
                   +   
    KIAA1006   313 N    313  

SM00320: domain 5 of 6, from 433 to 512: score 14.7, E = 2.3
                   *->t.kllrtlkgHtgespVtsvafspdggss..................
                        +  + ++ H++  pVt+ a+  d  ++      + + ++++++ +
    KIAA1006   433    IfENPYPMDIHES--PVTCTAYFADCPPDlilvlysigvkhkkqgys 477  

                   ................dspnllasgs.DgtirlWd<-*
                   +++ + +++  + + + +p+++++g  Dg+i++Wd   
    KIAA1006   478 nkewpisggawnlgaqTYPEIIITGHaDGSIKFWD    512  

SM00320: domain 6 of 6, from 537 to 577: score 2.8, E = 1.8e+02
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      ++k+++++   +++ ++  + ++p +      +++++++    + ++
    KIAA1006   537    EgKQTCEIV-EEDPFAIQMIYWCPES------RIFCVSGvSAYVIIY 576  

                   d<-*
                   +   
    KIAA1006   577 K    577  

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