hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14423148/chunk_1/iprscan-20080501-14423148.nocrc
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Query sequence: KIAA1006
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08366.3.fs LLGL2                                          238.2    7.7e-79   1
PF08366.3.ls LLGL2                                          240.2      4e-69   1
PF00400.22.ls WD domain, G-beta repeat                        62.1    1.7e-15   5
PF00400.22.fs WD domain, G-beta repeat                        56.1    7.9e-15   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00400.22.fs   4/5     287   313 ..    11    38 .]    14.7   0.0036
PF08366.3.ls   1/1     320   432 ..     1   112 []   240.2    4e-69
PF08366.3.fs   1/1     320   432 ..     1   112 []   238.2  7.7e-79
PF00400.22.ls   5/5     434   512 ..     1    38 []    21.6   0.0026
PF00400.22.fs   5/5     434   512 ..     1    38 []    19.6  0.00015

Alignments of top-scoring domains:
PF00400.22.fs: domain 4 of 5, from 287 to 313: score 14.7, E = 0.0036
                   *->tVtcvafspdsgpllasgSrDgtikiWd<-*
                      ++ +++++++ g+++ ++ +Dg++ +W+   
    KIAA1006   287    AIHSIDWHHE-GKQFMCSHSDGSLTLWN    313  

PF08366.3.ls: domain 1 of 1, from 320 to 432: score 240.2, E = 4e-69
                   *->plqstvPyGKsnkdG.kpepCKaInKvewkttrsgepfiIFSGGMPr
                      p+q+t+P+GKs+++G+k+e+CK+I+Kve+kt++++epfiIFSGG+++
    KIAA1006   320    PFQTTIPHGKSQREGrKSESCKPILKVEYKTCKNSEPFIIFSGGLSY 366  

                   asygdrhCitVlhgksttvLdftsrviDFftlcetpwenefqePyAlvVL
                   +++++r+++t++hgk++tvL++++++++F+tlcetp++nefqePyA+vVL
    KIAA1006   367 DKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVVVL 416  

                   LeeeLVviDLqtpGwP<-*
                   Le++L+v+DL++ ++P   
    KIAA1006   417 LEKDLIVVDLTQSNFP    432  

PF08366.3.fs: domain 1 of 1, from 320 to 432: score 238.2, E = 7.7e-79
                   *->plqstvPyGKsnkdG.kpepCKaInKvewkttrsgepfiIFSGGMPr
                      p+q+t+P+GKs+++G+k+e+CK+I+Kve+kt++++epfiIFSGG+++
    KIAA1006   320    PFQTTIPHGKSQREGrKSESCKPILKVEYKTCKNSEPFIIFSGGLSY 366  

                   asygdrhCitVlhgksttvLdftsrviDFftlcetpwenefqePyAlvVL
                   +++++r+++t++hgk++tvL++++++++F+tlcetp++nefqePyA+vVL
    KIAA1006   367 DKACRRPSLTIMHGKAITVLEMDHPIVEFLTLCETPYPNEFQEPYAVVVL 416  

                   LeeeLVviDLqtpGwP<-*
                   Le++L+v+DL++ ++P   
    KIAA1006   417 LEKDLIVVDLTQSNFP    432  

PF00400.22.ls: domain 5 of 5, from 434 to 512: score 21.6, E = 0.0026
                   *->geck.vl.gHtstVtcvafspd.........................
                       e     + H+s+Vtc a+  d +++      + + + ++ + ++++
    KIAA1006   434    FENPyPMdIHESPVTCTAYFADcppdlilvlysigvkhkkqgysnke 480  

                   ..............sgpllasgSrDgtikiWd<-*
                    + ++++ + ++ ++++++++g +Dg+ik Wd   
    KIAA1006   481 wpisggawnlgaqtYPEIIITGHADGSIKFWD    512  

PF00400.22.fs: domain 5 of 5, from 434 to 512: score 19.6, E = 0.00015
                   *->geck.vl.gHtstVtcvafspd.........................
                       e     + H+s+Vtc a+  d +++      + + + ++ + ++++
    KIAA1006   434    FENPyPMdIHESPVTCTAYFADcppdlilvlysigvkhkkqgysnke 480  

                   ..............sgpllasgSrDgtikiWd<-*
                    + ++++ + ++ ++++++++g +Dg+ik Wd   
    KIAA1006   481 wpisggawnlgaqtYPEIIITGHADGSIKFWD    512  

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