hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-14371965/chunk_1/iprscan-20080501-14371965.nocrc
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Query sequence: KIAA1003
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00695                                                 245.2    5.3e-69   2
SM00290                                                  26.7     0.0029   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00290    1/1      33    85 ..     1    61 []    26.7   0.0029
SM00695    1/2     705   788 ..     1   114 []   110.2  2.4e-28
SM00695    2/2     813   898 ..     1   114 []   135.1  7.7e-36

Alignments of top-scoring domains:
SM00290: domain 1 of 1, from 33 to 85: score 26.7, E = 0.0029
                   *->rCsvEvCgtie.nGalWlCLi..CGqvgCGRyqeggdGgGnsHaleH
                      +C+   Cg + +n  lW+CL+  C +vgCG++         +H+  H
    KIAA1003    33    TCQ--SCGVTGpN--LWACLQvaCPYVGCGESFA-------DHSTIH 68   

                   yeetgHplavklgtqrv<-*
                        H l v+l+t r+   
    KIAA1003    69 AQAKKHNLTVNLTTFRL    85   

SM00695: domain 1 of 2, from 705 to 788: score 110.2, E = 2.4e-28
                   *->nleegdtewylIskrWyeswedfvehthtcGsaleshcassggsdgk
                      ++e +++  +++s++W++++++f e                      
    KIAA1003   705    MREPSLL-RFYVSREWLNKFNTFAE---------------------- 728  

                   fPGPIDNsdilcsegdsatansprlkehLvegeDYvlipeelWnkLvrwY
                    PGPI+N+++lcs+g      ++  ++++++++ +v++p+++W++L++ +
    KIAA1003   729 -PGPITNQTFLCSHG------GIPPHKYHYIDDLVVILPQNVWEHLYNRF 771  

                   GggpgqepipRkvisqg<-*
                   Gggp++++++ ++i+q+   
    KIAA1003   772 GGGPAVNHLYVCSICQV    788  

SM00695: domain 2 of 2, from 813 to 898: score 135.1, E = 7.7e-36
                   *->nleegdtewylIskrWyeswedfvehthtcGsaleshcassggsdgk
                      ++e++ + +y+Is++W+++we+fv+                 g+d++
    KIAA1003   813    AEESPGV-IYCISMQWFREWEAFVK-----------------GKDNE 841  

                   fPGPIDNsdilcsegdsatansprlkehLvegeDYvlipeelWnkLvrwY
                   +PGPIDNs+i++++g        +++++L +g+DY++i+ee+W +L++ Y
    KIAA1003   842 PPGPIDNSRIAQVKG--------SGHVQLKQGADYGQISEETWTYLNSLY 883  

                   GggpgqepipRkvisqg<-*
                   Gggp  e+  R+++ q+   
    KIAA1003   884 GGGP--EIAIRQSVAQP    898  

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