hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-14354273/chunk_1/iprscan-20080501-14354273.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1002 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01424.13.fs R3H domain 62.5 1.2e-17 1 PF01424.13.ls R3H domain 64.4 3.5e-16 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01424.13.fs 1/1 162 215 .. 1 58 [] 62.5 1.2e-17 PF01424.13.ls 1/1 162 215 .. 1 58 [] 64.4 3.5e-16 Alignments of top-scoring domains: PF01424.13.fs: domain 1 of 1, from 162 to 215: score 62.5, E = 1.2e-17 *->eeeiadfvrvkstgksvflpPMtsyeRkliHqlaeefgdLeseSeGe e+ei++f + +++++ +++p+Mtsy+R+l+H++a++fg + ++++++ KIAA1002 162 EQEILEF-INDNNNQFKKFPQMTSYHRMLLHRVAAYFG-MDHNVDQT 206 gpkRrvviskk<-* g + v+i+k+ KIAA1002 207 G--KAVIINKT 215 PF01424.13.ls: domain 1 of 1, from 162 to 215: score 64.4, E = 3.5e-16 *->eeeiadfvrvkstgksvflpPMtsyeRkliHqlaeefgdLeseSeGe e+ei++f + +++++ +++p+Mtsy+R+l+H++a++fg + ++++++ KIAA1002 162 EQEILEF-INDNNNQFKKFPQMTSYHRMLLHRVAAYFG-MDHNVDQT 206 gpkRrvviskk<-* g + v+i+k+ KIAA1002 207 G--KAVIINKT 215 //