hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18561531/chunk_1/iprscan-20080502-18561531.nocrc
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Query sequence: KIAA0993
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00064                                                 106.7    2.7e-27   1
SM00320                                                  88.8    6.5e-22   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00320    1/5    1102  1136 ..     1    46 []     8.3       24
SM00320    2/5    1146  1185 ..     1    46 []    35.5  7.1e-06
SM00320    3/5    1188  1226 ..     1    46 []    16.0      1.4
SM00320    4/5    1231  1275 ..     1    46 []    18.4      0.6
SM00320    5/5    1429  1468 ..     1    46 []    10.6       10
SM00064    1/1    1476  1545 ..     1    81 []   106.7  2.7e-27

Alignments of top-scoring domains:
SM00320: domain 1 of 5, from 1102 to 1136: score 8.3, E = 24
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                        ++l+++        +++  ++p+       +l+++g++   +++W
    KIAA0993  1102    VyECLSEWG------QILCA-ICPNP------KLVITGGtSTVVCVW 1135 

                   d<-*
                   +   
    KIAA0993  1136 E    1136 

SM00320: domain 2 of 5, from 1146 to 1185: score 35.5, E = 7.1e-06
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      t +l + l gHt+   Vt+ + s         ++++sgs+D+t+ +W
    KIAA0993  1146    TvTLKQALLGHTD--TVTCATASLAY------HIIVSGSrDRTCIIW 1184 

                   d<-*
                   d   
    KIAA0993  1185 D    1185 

SM00320: domain 3 of 5, from 1188 to 1226: score 16.0, E = 1.4
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      + + l  l+gH++  pV++++++           ++s+ +   i++W
    KIAA0993  1188    KlSFLTQLRGHRA--PVSALCINELT------GDIVSCAgTY-IHVW 1225 

                   d<-*
                   +   
    KIAA0993  1226 S    1226 

SM00320: domain 4 of 5, from 1231 to 1275: score 18.4, E = 0.6
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                      +   + t++g ++   + +++ s  +   d  n++++g +Dg +r+W
    KIAA0993  1231    PiVSVNTFTGRSQ--QIICCCMSEMNEW-DTQNVIVTGHsDGVVRFW 1274 

                   d<-*
                       
    KIAA0993  1275 R    1275 

SM00320: domain 5 of 5, from 1429 to 1468: score 10.6, E = 10
                   *->t.kllrtlkgHtgespVtsvafspdggssdspnllasgs.DgtirlW
                       +   r+ ++H +  +Vt++ +s d+      +++++g++ g +  W
    KIAA0993  1429    HtAFDRKDNAHPA--EVTALGISKDH------SRILVGDsRGRVFSW 1467 

                   d<-*
                   +   
    KIAA0993  1468 S    1468 

SM00064: domain 1 of 1, from 1476 to 1545: score 106.7, E = 2.7e-27
                   *->etaphWvpDeeasnClmnCgkeFtlvtrRrHHCRnCGrifCskCssk
                        a+hWv+De  ++C ++C++ F+l t+RrHHCRnCG++fC+kCs++
    KIAA0993  1476    SAADHWVKDEGGDSC-SGCSVRFSL-TERRHHCRNCGQLFCQKCSRF 1520 

                   kaplpklgkekkngknedftpvRVCdsCyerlsk<-*
                   ++ +  l+++          pvRVC  Cy +l++   
    KIAA0993  1521 QSEIKRLKISS---------PVRVCQNCYYNLQH    1545 

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