hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18561531/chunk_1/iprscan-20080502-18561531.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0993 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02138.8.ls Beige/BEACH domain 742.0 3.6e-220 1 PF02138.8.fs Beige/BEACH domain 740.1 1.3e-219 1 PF01363.12.ls FYVE zinc finger 102.2 1.4e-27 1 PF01363.12.fs FYVE zinc finger 100.4 5.1e-27 1 PF00400.22.fs WD domain, G-beta repeat 81.6 5.1e-22 5 PF00400.22.ls WD domain, G-beta repeat 82.1 1.6e-21 5 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02138.8.ls 1/1 725 1006 .. 1 287 [] 742.0 3.6e-220 PF02138.8.fs 1/1 725 1006 .. 1 287 [] 740.1 1.3e-219 PF00400.22.ls 2/5 1147 1185 .. 1 38 [] 40.1 7e-09 PF00400.22.fs 2/5 1147 1185 .. 1 38 [] 38.1 8.9e-10 PF00400.22.fs 3/5 1189 1226 .. 1 38 [] 12.8 0.013 PF00400.22.fs 4/5 1232 1275 .. 1 38 [] 19.0 0.00022 PF01363.12.ls 1/1 1479 1545 .. 1 77 [] 102.2 1.4e-27 PF01363.12.fs 1/1 1479 1545 .. 1 77 [] 100.4 5.1e-27 Alignments of top-scoring domains: PF02138.8.ls: domain 1 of 1, from 725 to 1006: score 742.0, E = 3.6e-220 *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL T+RW+rGeISNF+YLmhLNtlAGRsyNDL+QYPVFPWIlADY+Se++ KIAA0993 725 TQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEEV 771 DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY DL+nP+tFR+L KP+GAQ+ eR++q+++RY+ +edp+ +e+p++HYGtHY KIAA0993 772 DLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPN-GETPAYHYGTHY 820 SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm SSa+iV +YL+R+ePFt+ fL LQgG+FD+ADR+FhS++e+W sas+ nm KIAA0993 821 SSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNM 870 tDVKELIPEFFyLPEfLvNrngfDlGvrQnGekVnDVdLPPWAkgDEKAd +DVKELIPEFFyLPEfL N+n+fDlG +QnG+k++DV+LPPWAkg d KIAA0993 871 ADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKG----D 916 PeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhltY P+eFi+ hReALE dYVSahLHeWIDLIFGYKQ+G++Av A+NVFhhl+Y KIAA0993 917 PREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFY 966 eGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-* eG VD+ +i DP+ A++++I+nFGQ+PkQLF+kPHP++ KIAA0993 967 EGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPK 1006 PF02138.8.fs: domain 1 of 1, from 725 to 1006: score 740.1, E = 1.3e-219 *->TkRWqrGeISNFeYLmhLNtlAGRsyNDLsQYPVFPWIlADYtSesL T+RW+rGeISNF+YLmhLNtlAGRsyNDL+QYPVFPWIlADY+Se++ KIAA0993 725 TQRWERGEISNFQYLMHLNTLAGRSYNDLMQYPVFPWILADYDSEEV 771 DLsnPstFRdLSKPiGAQspeReeqFleRYesledpeekevppFHYGtHY DL+nP+tFR+L KP+GAQ+ eR++q+++RY+ +edp+ +e+p++HYGtHY KIAA0993 772 DLTNPKTFRNLAKPMGAQTDERLAQYKKRYKDWEDPN-GETPAYHYGTHY 820 SSagiVlfYLiRlePFteefLaLQgGkFDhADRlFhSieetWrsaslenm SSa+iV +YL+R+ePFt+ fL LQgG+FD+ADR+FhS++e+W sas+ nm KIAA0993 821 SSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNM 870 tDVKELIPEFFyLPEfLvNrngfDlGvrQnGekVnDVdLPPWAkgDEKAd +DVKELIPEFFyLPEfL N+n+fDlG +QnG+k++DV+LPPWAkg d KIAA0993 871 ADVKELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKG----D 916 PeeFiqkhReALESdYVSahLHeWIDLIFGYKQrGkeAvkAiNVFhhltY P+eFi+ hReALE dYVSahLHeWIDLIFGYKQ+G++Av A+NVFhhl+Y KIAA0993 917 PREFIRVHREALECDYVSAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFY 966 eGaVDldsieDPverrAieaqIknFGQTPkQLFtkPHPkR<-* eG VD+ +i DP+ A++++I+nFGQ+PkQLF+kPHP++ KIAA0993 967 EGQVDIYNINDPLKETATIGFINNFGQIPKQLFKKPHPPK 1006 PF00400.22.ls: domain 2 of 5, from 1147 to 1185: score 40.1, E = 7e-09 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++k+ l gHt+tVtc s +++++sgSrD+t+ iWd KIAA0993 1147 VTLKqALlGHTDTVTCATASLA-YHIIVSGSRDRTCIIWD 1185 PF00400.22.fs: domain 2 of 5, from 1147 to 1185: score 38.1, E = 8.9e-10 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++k+ l gHt+tVtc s +++++sgSrD+t+ iWd KIAA0993 1147 VTLKqALlGHTDTVTCATASLA-YHIIVSGSRDRTCIIWD 1185 PF00400.22.fs: domain 3 of 5, from 1189 to 1226: score 12.8, E = 0.013 *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-* ++ l+gH ++V++++++ ++s+ i++W+ KIAA0993 1189 LSFLtQLrGHRAPVSALCINEL-TGDIVSCAG-TYIHVWS 1226 PF00400.22.fs: domain 4 of 5, from 1232 to 1275: score 19.0, E = 0.00022 *->geck.vl.gHtstVtcvafspd....sgpllasgSrDgtikiWd<-* +++++g + + c++ s ++ + ++++++g +Dg ++ W KIAA0993 1232 IVSVnTFtGRSQQIICCCMSEMnewdTQNVIVTGHSDGVVRFWR 1275 PF01363.12.ls: domain 1 of 1, from 1479 to 1545: score 102.2, E = 1.4e-27 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll +hWv+De ++C+ C++ F+ lt+RrHHCR+CG++fC++Cs++ + + KIAA0993 1479 DHWVKDEGGDSCSGCSVRFS-LTERRHHCRNCGQLFCQKCSRFQSEI 1524 pylgiaallkndviekpvRVCdsCydrlnk<-* + l i + pvRVC++Cy +l++ KIAA0993 1525 KRLKI---------SSPVRVCQNCYYNLQH 1545 PF01363.12.fs: domain 1 of 1, from 1479 to 1545: score 100.4, E = 5.1e-27 *->phWvpDeevsnCmrCgkpFtkltkRrHHCRaCGrifCgsCssktvll +hWv+De ++C+ C++ F+ lt+RrHHCR+CG++fC++Cs++ + + KIAA0993 1479 DHWVKDEGGDSCSGCSVRFS-LTERRHHCRNCGQLFCQKCSRFQSEI 1524 pylgiaallkndviekpvRVCdsCydrlnk<-* + l i + pvRVC++Cy +l++ KIAA0993 1525 KRLKI---------SSPVRVCQNCYYNLQH 1545 //