# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj08038.fasta.huge -Q ../query/KIAA0985.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0985, 697 aa vs ./tmplib.23663 library 1986808 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 12.1509+/-0.0121; mu= -14.2539+/- 0.818 mean_var=663.3469+/-158.069, 0's: 0 Z-trim: 6 B-trim: 0 in 0/40 Lambda= 0.049797 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1342 ( 426 res) fj00418 ( 426) 303 36.5 0.0061 >>KIAA1342 ( 426 res) fj00418 (426 aa) initn: 554 init1: 291 opt: 303 Z-score: 144.6 bits: 36.5 E(): 0.0061 Smith-Waterman score: 506; 29.474% identity (58.421% similar) in 380 aa overlap (315-688:77-423) 290 300 310 320 330 340 KIAA09 SVQSPAPPQPGQPGTPGGSRPGPGPAGRFPDQKPEVA--PSDPGTTAPPREERTGGVGGY :.: :: :. : .. :. :.. KIAA13 NKTPPYKFVHVLKGVDIYPENLNSKKKFGADDKNEVKNKPAVPKNSLHLDLEKRDLNGNF 50 60 70 80 90 100 350 360 370 380 390 400 KIAA09 PAVGAREDRMSHPSGPYSQASAAAPQP--AAARQPPPPEEEEEEANSYDSDEATTLGALE : .. . :..: :. :.:. . .. :: . .. . .. ::.: KIAA13 PKTNLK------PGSP-SDLENATPKLFLEGEKESVSPESLKSSTSLTSEEKQEKLGTLF 110 120 130 140 150 410 420 430 440 450 KIAA09 FSLLYDQDNSSLQCTIIKAKGLKPMDSNGL-ADPYVKLHLLPGASKSNKLRTKTLRNTRN ::: :. . ... .: .:.:: :: ... .:::.:. .:: :..:..:..::.: . KIAA13 FSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILP--EKKHKVKTRVLRKTLD 160 170 180 190 200 210 460 470 480 490 500 510 KIAA09 PIWNETLVYHGITDEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKPNQRKNFNICL : ..::....:: ..:. .:.... . :.:.....:::. KIAA13 PAFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEV------------------- 220 230 240 250 520 530 540 550 560 570 KIAA09 ERVIPMKRAGTTGSARGMALYEEEQVER-VGDIEERGKILVSLMYSTQQGGLIVGIIRCV .::. .: : .: :...: ..: : ::..:.:: :.. . : : ... KIAA13 --LIPL--SGIELS-EGKMLMNREIIKRNVRKSSGRGELLISLCYQSTTNTLTVVVLKAR 260 270 280 290 300 310 580 590 600 610 620 630 KIAA09 HLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLAKKSL :: :..: :::.::. : . .:.::..:: : : ::: : .:: : :. KIAA13 HLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCEGLEDISV 320 330 340 350 360 370 640 650 660 670 680 690 KIAA09 DISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQNENHVSSD .. : : . :. :. :: :: .:.: .:: : ..: .:: : KIAA13 EFLVLDSERGSRNEVIGQLVLGAAAEGTGGEHWKEICDYPRRQIAKWHVLCDG 380 390 400 410 420 697 residues in 1 query sequences 1986808 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:24:11 2008 done: Thu Dec 18 15:24:12 2008 Total Scan time: 0.550 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]