# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj06890.fasta.huge -Q ../query/KIAA0975.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0975, 1528 aa
 vs ./tmplib.23663 library

1985977 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 9.4443+/-0.0098; mu= -0.2618+/- 0.665
 mean_var=425.3790+/-103.423, 0's: 0 Z-trim: 5  B-trim: 0 in 0/40
 Lambda= 0.062185

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 41, opt: 29, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1898  ( 1013 res)   fk06427                    (1013)  319 44.2 0.00016


>>KIAA1898  ( 1013 res)   fk06427                         (1013 aa)
 initn: 446 init1: 168 opt: 319  Z-score: 173.1  bits: 44.2 E(): 0.00016
Smith-Waterman score: 377;  26.829% identity (51.220% similar) in 615 aa overlap (204-801:6-561)

           180       190       200       210       220       230   
KIAA09 GPLQLYAVTEQLQQGKPTCASGDAKTDLGHILDFTCRLKYLKVSGTEGPFGTSNIQEQLL
                                     .:. :  :: ..:.:  :: :         
KIAA18                          QFLFDVLQKTLSLKLVHVAGP-GPTG---------
                                        10        20               

           240       250       260       270       280       290   
KIAA09 PFDLSIFKSLHQVEISHCDAKHIRGLVASKPTLATLSVRFSATSMKEVLVPEASEFDEWE
       :. .  ::::...:.     . ..:: .    : ::    :  ...:.:   ...:    
KIAA18 PIKIFPFKSLRHLELRGVPLHCLHGLRGIYSQLETLICSRSLQALEELLSACGGDF----
          30        40        50        60        70        80     

           300       310       320       330       340       350   
KIAA09 PEGTTLEGPVTAVIPTWQALTTLDLSHNSISEIDESVKLIPKIEFLDLSHNGLLVVDN-L
                  ...: : :: . ..:.:... .: :..:.  ..::.:::: .   .. :
KIAA18 ----------CSALP-WLALLSANFSYNALTALDSSLRLLSALRFLNLSHNQVQDCQGFL
                         90       100       110       120       130

            360       370       380       390       400       410  
KIAA09 QHLYNLVHLDLSYNKLSSLEGLHTKLGNIKTLNLAGNLLESLSGLHKLYSLVNLDLRDNR
       . : .: :::.:::.:  .  .  . . . .: : :: :.:: ::..: .: .:::  : 
KIAA18 MDLCELHHLDISYNRLHLVPRMGPSGAALGVLILRGNELRSLHGLEQLRNLRHLDLAYNL
              140       150       160       170       180       190

            420       430       440       450       460            
KIAA09 IEQMEEVRSIGSLPCLEHVSLLNNPLSIIPDYRTKVLAQFGERASEVC----LDDTVTTE
       .:  .:.  .  :  :... : .::: . :..:. .   .. :: ..     ::  : . 
KIAA18 LEGHRELSPLWLLAELRKLYLEGNPLWFHPEHRAATAQYLSPRARDAATGFLLDGKVLSL
              200       210       220       230       240       250

      470       480       490        500       510       520       
KIAA09 KELDTVEVLKAIQKAKEVKSKL-SNPEKKGGEDSRLSAAPCIRPSSSPPTVAPASASLPQ
        ...:   :     .  .   . :.:: .:: :  :: .      ::  .:.       :
KIAA18 TDFQTHTSLGLSPMGPPLPWPVGSTPETSGGPD--LSDS-----LSSGGVVT-------Q
              260       270       280              290             

       530       540       550       560        570       580      
KIAA09 PILSNQGIMFVQEEALASSLSSTDSLTPEHQPIAQGCSD-SLESIPAGQAASDDLRDVPG
       :.: .       ..:  :  :.::   :: . .  . .   ... :  .  :. .:.  :
KIAA18 PLLHKVKSRVRVRRASISEPSDTD---PEPRTLNPSPAGWFVQQHPELELMSS-FRERFG
        300       310       320          330       340        350  

        590       600       610       620       630       640      
KIAA09 AVGGASPEHAEPEVQVVPGSGQIIFLPFTCIGYTATNQDFIQRLSTLIRQAIERQLPAWI
               : ::       ::.   :: :     .:.       :.   ..  :  :   
KIAA18 RNWLQYRSHLEP-------SGNP--LPAT----PTTSAPSAPPASSQGPDTAPRPSPPQE
            360                370           380       390         

        650         660       670       680       690       700    
KIAA09 EAANQREEGQ--GEQGEEEDEEEEEEEDVAENRYFEMGPPDVEEEEGGGQGEEEEEEEED
       :: . .:  :  .:. . : .:::::..  :..  : :    . :: .:. ::::.....
KIAA18 EARGPQESPQKMSEEVRAEPQEEEEEKEGKEEK--EEGEMVEQGEEEAGEEEEEEQDQKE
     400       410       420       430         440       450       

          710       720       730       740       750       760    
KIAA09 EEAEEERLALEWALGADEDFLLEHIRILKVLWCFLIHVQGSIRQFAACLVLTDFGIAVFE
        :::  :  :   : . :    ..  .:.:    :..:. .  .    : : ..  : .:
KIAA18 VEAELCRPLLVCPLEGPEGVRGREC-FLRVTSAHLFEVELQAARTLERLELQSLEAAEIE
       460       470       480        490       500       510      

          770               780       790       800       810      
KIAA09 IPHQESRG---SSQHILS-----SLRFVFCFPHGDLTEFGFLMPELCLVLKVRHSENTLF
          : .:.   ... .:      :::: .  :  .: ..  : :.               
KIAA18 PEAQAQRSPRPTGSDLLPGAPILSLRFSYICPDRQLRRYLVLEPDAHAAVQELLAVLTPV
        520       530       540       550       560       570      

        820       830       840       850       860       870      
KIAA09 IISDAANLHEFHADLRSCFAPQHMAMLCSPILYGSHTSLQEFLRQLLTFYKVAGGCQERS
                                                                   
KIAA18 TNVAREQLGEARDLLLGRFQCLRCGHEFKPEEPRMGLDSEEGWRPLFQKTESPAVCPNCG
        580       590       600       610       620       630      




1528 residues in 1 query   sequences
1985977 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:23:48 2008 done: Thu Dec 18 15:23:49 2008
 Total Scan time:  0.870 Total Display time:  0.050

Function used was FASTA [version 34.26.5 April 26, 2007]