hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-18212471/chunk_1/iprscan-20080502-18212471.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0972 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 328.9 8.4e-96 10 PF00096.16.fs Zinc finger, C2H2 type 309.2 7e-90 10 PF01352.17.fs KRAB box 93.6 5.5e-26 1 PF01352.17.ls KRAB box 95.6 1.3e-25 1 PF01286.9.fs XPA protein N-terminal 38.6 3.2e-10 7 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 65 105 .. 1 41 [] 93.6 5.5e-26 PF01352.17.ls 1/1 65 105 .. 1 41 [] 95.6 1.3e-25 PF00096.16.fs 2/10 423 445 .. 1 24 [] 33.4 4.4e-07 PF00096.16.ls 2/10 423 445 .. 1 24 [] 35.4 1.8e-07 PF00096.16.ls 3/10 451 473 .. 1 24 [] 38.2 2.7e-08 PF00096.16.fs 3/10 451 473 .. 1 24 [] 36.2 9e-08 PF00096.16.ls 4/10 479 501 .. 1 24 [] 37.8 3.4e-08 PF00096.16.fs 4/10 479 501 .. 1 24 [] 35.9 1.1e-07 PF00096.16.ls 5/10 507 529 .. 1 24 [] 35.7 1.4e-07 PF00096.16.fs 5/10 507 529 .. 1 24 [] 33.8 3.6e-07 PF00096.16.ls 6/10 535 557 .. 1 24 [] 39.0 1.5e-08 PF00096.16.fs 6/10 535 557 .. 1 24 [] 37.0 5.6e-08 PF00096.16.fs 7/10 563 585 .. 1 24 [] 27.8 1.1e-05 PF00096.16.ls 7/10 563 585 .. 1 24 [] 29.8 9e-06 PF00096.16.fs 8/10 591 613 .. 1 24 [] 36.0 1e-07 PF00096.16.ls 8/10 591 613 .. 1 24 [] 37.9 3.1e-08 PF00096.16.fs 9/10 619 641 .. 1 24 [] 26.8 1.9e-05 PF00096.16.ls 9/10 619 641 .. 1 24 [] 28.8 1.8e-05 PF00096.16.fs 10/10 647 669 .. 1 24 [] 37.4 4.6e-08 PF00096.16.ls 10/10 647 669 .. 1 24 [] 39.4 1.2e-08 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 65 to 105: score 93.6, E = 5.5e-26 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+F+DV+++FtqEEW++ p Q+nLYrdVMlENysnLvS+g KIAA0972 65 VSFKDVTIEFTQEEWQQMAPVQKNLYRDVMLENYSNLVSVG 105 PF01352.17.ls: domain 1 of 1, from 65 to 105: score 95.6, E = 1.3e-25 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* V+F+DV+++FtqEEW++ p Q+nLYrdVMlENysnLvS+g KIAA0972 65 VSFKDVTIEFTQEEWQQMAPVQKNLYRDVMLENYSNLVSVG 105 PF00096.16.fs: domain 2 of 10, from 423 to 445: score 33.4, E = 4.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksF++k++L +H+rtH KIAA0972 423 YKCN-ECGKSFCQKGHLIQHQRTH 445 PF00096.16.ls: domain 2 of 10, from 423 to 445: score 35.4, E = 1.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +CgksF++k++L +H+rtH KIAA0972 423 YKCN-ECGKSFCQKGHLIQHQRTH 445 PF00096.16.ls: domain 3 of 10, from 451 to 473: score 38.2, E = 2.7e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs+ks+L +H+r+H KIAA0972 451 FECS-ECGKTFSQKSHLSTHQRIH 473 PF00096.16.fs: domain 3 of 10, from 451 to 473: score 36.2, E = 9e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+Fs+ks+L +H+r+H KIAA0972 451 FECS-ECGKTFSQKSHLSTHQRIH 473 PF00096.16.ls: domain 4 of 10, from 479 to 501: score 37.8, E = 3.4e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +ks+L+ H+r+H KIAA0972 479 YKCN-ECGKTFVQKSTLRGHQRIH 501 PF00096.16.fs: domain 4 of 10, from 479 to 501: score 35.9, E = 1.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ykC+ +Cgk+F +ks+L+ H+r+H KIAA0972 479 YKCN-ECGKTFVQKSTLRGHQRIH 501 PF00096.16.ls: domain 5 of 10, from 507 to 529: score 35.7, E = 1.4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +ks+L+ H r+H KIAA0972 507 YECS-ECGKTFVQKSTLRDHHRIH 529 PF00096.16.fs: domain 5 of 10, from 507 to 529: score 33.8, E = 3.6e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk+F +ks+L+ H r+H KIAA0972 507 YECS-ECGKTFVQKSTLRDHHRIH 529 PF00096.16.ls: domain 6 of 10, from 535 to 557: score 39.0, E = 1.5e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F +ksnL+ H+rtH KIAA0972 535 FQCN-QCGKTFGQKSNLRIHQRTH 557 PF00096.16.fs: domain 6 of 10, from 535 to 557: score 37.0, E = 5.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F +ksnL+ H+rtH KIAA0972 535 FQCN-QCGKTFGQKSNLRIHQRTH 557 PF00096.16.fs: domain 7 of 10, from 563 to 585: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C ksF rk++L +H++tH KIAA0972 563 YQCN-ECEKSFWRKDHLIQHQKTH 585 PF00096.16.ls: domain 7 of 10, from 563 to 585: score 29.8, E = 9e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +C ksF rk++L +H++tH KIAA0972 563 YQCN-ECEKSFWRKDHLIQHQKTH 585 PF00096.16.fs: domain 8 of 10, from 591 to 613: score 36.0, E = 1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F r s+L+ H+r+H KIAA0972 591 FKCN-ECGKTFARTSTLRVHQRIH 613 PF00096.16.ls: domain 8 of 10, from 591 to 613: score 37.9, E = 3.1e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F r s+L+ H+r+H KIAA0972 591 FKCN-ECGKTFARTSTLRVHQRIH 613 PF00096.16.fs: domain 9 of 10, from 619 to 641: score 26.8, E = 1.9e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F rk+ L H+r+H KIAA0972 619 FKCN-ECGKKFVRKAILSDHQRIH 641 PF00096.16.ls: domain 9 of 10, from 619 to 641: score 28.8, E = 1.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* +kC+ +Cgk+F rk+ L H+r+H KIAA0972 619 FKCN-ECGKKFVRKAILSDHQRIH 641 PF00096.16.fs: domain 10 of 10, from 647 to 669: score 37.4, E = 4.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F +ksnL+ H+rtH KIAA0972 647 FQCN-KCGKTFGQKSNLRIHQRTH 669 PF00096.16.ls: domain 10 of 10, from 647 to 669: score 39.4, E = 1.2e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F +ksnL+ H+rtH KIAA0972 647 FQCN-KCGKTFGQKSNLRIHQRTH 669 //