hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18111127/chunk_1/iprscan-20080502-18111127.nocrc
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Query sequence: KIAA0966
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02383.9.fs SacI homology domain                           234.9    1.6e-67   3
PF02383.9.ls SacI homology domain                           228.0      2e-65   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02383.9.ls   1/1      66   440 ..     1   366 []   228.0    2e-65
PF02383.9.fs   2/3     191   265 ..    97   195 ..    63.2  5.8e-18
PF02383.9.fs   3/3     296   440 ..   201   366 .]   171.2  8.7e-49

Alignments of top-scoring domains:
PF02383.9.ls: domain 1 of 1, from 66 to 440: score 228.0, E = 2e-65
                   *->iyGllGlIkLkggdvmLyYLivITgkskVGqigpghaIYkitdvdfi
                      + G++G I L ++      Li+I  k  VG+ + +h++ k+t++ ++
    KIAA0966    66    VEGVIGKIQLHSD--LPWWLILIRQKALVGKLPGDHEVCKVTKIAVL 110  

                   slnndsvdetdiekkDEarylkihPdgisTdt..................
                   sl +   ++       E+++ k h      + + +++++  +++++++  
    KIAA0966   111 SLSEMEPQDL------ELELCKKH------HFginkpekiipspddskfl 148  

                   ........................qeklpkhPcslLkkvLstg.tFYFSy
                    ++ ++ +++ + +++++ +++++ ekl      +L k + ++++FY+S 
    KIAA0966   149 lktfthiksnvsapnkkkvkeskeKEKLERRLLEELLKMFMDSeSFYYSL 198  

                   tyDltntLQrnskvlraplenlessvdradesifdiITdynerFvWNsfL
                   tyDltn++Qr s+    +++ +++ +   d            rF+WN ++
    KIAA0966   199 TYDLTNSVQRQST----GERDGRPLWQKVDD-----------RFFWNKYM 233  

                   leelinfRshLdneekqqlnverFllpvIhGfikqaslyvn.........
                    ++l          e   ++v+ +++p+I+Gf+++++l+vn ++++++++
    KIAA0966   234 IQDLT---------EIGTPDVDFWIIPMIQGFVQIEELVVNytessddek 274  

                   ................gktisltLISRRStkRAGTRFlkRGvnddGhVAN
                   +++++++++++  ++ + ++ ++LISRRS++RAG R+ +RGv+++G+VAN
    KIAA0966   275 sspetppqestcvddiHPRFLVALISRRSRHRAGMRYKRRGVDKNGNVAN 324  

                   FVETEQIVydsdsksekarysSFVQvRGSIPLFWeQdvegsnLsyKPliv
                   +VETEQ +++ + +       SFVQ+RGS+P+FW+Q    +  +y P+++
    KIAA0966   325 YVETEQLIHVHNHTL------SFVQTRGSVPVFWSQ----VGYRYNPRPR 364  

                   lrsve.atapafdrHFddlkqrYGnpivIvNLiktkkekEkplsklyeef
                   l+++e++t + f  HF+++ ++Y  ++vI+NL+++  ++Ek ++ +y ++
    KIAA0966   365 LDRSEkETVAYFCAHFEEQLNIYK-KQVIINLVDQ-AGREKIIGDAYLKQ 412  

                   lkaseylnsflpeeekirytsFDFHkeckqmnmswdrl<-*
                   +   +  ns      ++ y+sFDFH  c++m  +++++   
    KIAA0966   413 VLLFN--NS------HLTYVSFDFHEHCRGM--KFENV    440  

PF02383.9.fs: domain 2 of 3, from 191 to 265: score 63.2, E = 5.8e-18
                   *->tgtFYFSytyDltntLQrnskvlraplenlessvdradesifdiITd
                      + +FY+S tyDltn++Qr s+    +++ +++ +   d         
    KIAA0966   191    SESFYYSLTYDLTNSVQRQST----GERDGRPLWQKVDD-------- 225  

                   ynerFvWNsfLleelinfRshLdneekqqlnverFllpvIhGfikqasly
                      rF+WN ++ ++l          e   ++v+ +++p+I+Gf+++++l+
    KIAA0966   226 ---RFFWNKYMIQDLT---------EIGTPDVDFWIIPMIQGFVQIEELV 263  

                   vn<-*
                   vn   
    KIAA0966   264 VN    265  

PF02383.9.fs: domain 3 of 3, from 296 to 440: score 171.2, E = 8.7e-49
                   *->ltLISRRStkRAGTRFlkRGvnddGhVANFVETEQIVydsdskseka
                      ++LISRRS++RAG R+ +RGv+++G+VAN+VETEQ +++ + +    
    KIAA0966   296    VALISRRSRHRAGMRYKRRGVDKNGNVANYVETEQLIHVHNHTL--- 339  

                   rysSFVQvRGSIPLFWeQdvegsnLsyKPlivlrsve.atapafdrHFdd
                      SFVQ+RGS+P+FW+Q    +  +y P+++l+++e++t + f  HF++
    KIAA0966   340 ---SFVQTRGSVPVFWSQ----VGYRYNPRPRLDRSEkETVAYFCAHFEE 382  

                   lkqrYGnpivIvNLiktkkekEkplsklyeeflkaseylnsflpeeekir
                   + ++Y  ++vI+NL+++  ++Ek ++ +y +++   +  ns      ++ 
    KIAA0966   383 QLNIYK-KQVIINLVDQ-AGREKIIGDAYLKQVLLFN--NS------HLT 422  

                   ytsFDFHkeckqmnmswdrl<-*
                   y+sFDFH  c++m  +++++   
    KIAA0966   423 YVSFDFHEHCRGM--KFENV    440  

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