hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18075276/chunk_1/iprscan-20080502-18075276.nocrc
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Query sequence: KIAA0964
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF03359.4.fs Guanylate-kinase-associated protein (GKAP) p   814.9   4.1e-242   2
PF03359.4.ls Guanylate-kinase-associated protein (GKAP) p   798.7     3e-237   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF03359.4.fs   1/2     663   680 ..     1    18 [.    19.6  2.5e-05
PF03359.4.ls   1/1     663   999 .]     1   365 []   798.7   3e-237
PF03359.4.fs   2/2     708   999 .]    50   365 .]   795.3 3.2e-236

Alignments of top-scoring domains:
PF03359.4.fs: domain 1 of 2, from 663 to 680: score 19.6, E = 2.5e-05
                   *->EdrskavkkkklsSIGiQ<-*
                      E++ +a +k+klsSIGiQ   
    KIAA0964   663    ESHPEAAPKRKLSSIGIQ    680  

PF03359.4.ls: domain 1 of 1, from 663 to 999: score 798.7, E = 3e-237
                   *->EdrskavkkkklsSIGiQVddieesdkkeEsksaskFqSiGVQVEed
                      E++ +a +k+klsSIGiQ           E              E  
    KIAA0964   663    ESHPEAAPKRKLSSIGIQERTRRNGSHLSEDNGPKAIDVMAPSSE-- 707  

                   kRsarFkRSnSvtaavqADldleDaadsslkstEDksLqpgrtarrqsse
                     s+ +  S+S+++++++D+d++Da+dss+ks+E +sL p++t +++s++
    KIAA0964   708 --SSVP--SHSMSSRRDTDSDTQDANDSSCKSSE-RSL-PDCTPHPNSIS 751  

                   adaGPRAstvsvfktaqikralAydddyDldYEPPAldaSslPPPdPAPG
                   +da    ++++++k+aqikr+l+y+d++D++     l+aSslPPPdP   
    KIAA0964   752 IDA----GPRQAPKIAQIKRNLSYGDNSDPA-----LEASSLPPPDP--- 789  

                   PGSGRRDSWmesssespaeaaqrSaCrRDGeWFLKLLqAEverLEGWCkQ
                           W+e+ss+spae+aq++aCrRDG+WFLKLLqAE+erLEGWC+Q
    KIAA0964   790 --------WLETSSSSPAEPAQPGACRRDGYWFLKLLQAETERLEGWCCQ 831  

                   MerEakennLpEeiLgKirsAVGSAQLLmSQKfqQFreLCeqnLnPdAfP
                   M++E+kennL+Ee+LgK++sAVGSAQLLmSQKfqQFr+LCeqnLnPdA+P
    KIAA0964   832 MDKETKENNLSEEVLGKVLSAVGSAQLLMSQKFQQFRGLCEQNLNPDANP 881  

                   rPTaQDLAGFWDLLQLSIEdismKFdELyqLKANsWklletPlKdKeEkk
                   rPTaQDLAGFWDLLQLSIEdismKFdELy+LKANsW+l+etP+K+KeEkk
    KIAA0964   882 RPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLVETPEKRKEEKK 931  

                   aPPPVPKKPAkgkAalvrerSldavdkQRQEARKRLLAAKRAASvRqnSA
                   +PPPVPKKPAk+k a++r++++da dkQRQEARKRLLAAKRAASvRqnSA
    KIAA0964   932 PPPPVPKKPAKSKPAVSRDKASDASDKQRQEARKRLLAAKRAASVRQNSA 981  

                   TESAdSIEIYiPEAQTRL<-*
                   TESAdSIEIY+PEAQTRL   
    KIAA0964   982 TESADSIEIYVPEAQTRL    999  

PF03359.4.fs: domain 2 of 2, from 708 to 999: score 795.3, E = 3.2e-236
                   *->sarFkRSnSvtaavqADldleDaadsslkstEDksLqpgrtarrqss
                      s+ +  S+S+++++++D+d++Da+dss+ks+E +sL p++t +++s+
    KIAA0964   708    SSVP--SHSMSSRRDTDSDTQDANDSSCKSSE-RSL-PDCTPHPNSI 750  

                   eadaGPRAstvsvfktaqikralAydddyDldYEPPAldaSslPPPdPAP
                   ++da    ++++++k+aqikr+l+y+d++D++     l+aSslPPPdP  
    KIAA0964   751 SIDA----GPRQAPKIAQIKRNLSYGDNSDPA-----LEASSLPPPDP-- 789  

                   GPGSGRRDSWmesssespaeaaqrSaCrRDGeWFLKLLqAEverLEGWCk
                            W+e+ss+spae+aq++aCrRDG+WFLKLLqAE+erLEGWC+
    KIAA0964   790 ---------WLETSSSSPAEPAQPGACRRDGYWFLKLLQAETERLEGWCC 830  

                   QMerEakennLpEeiLgKirsAVGSAQLLmSQKfqQFreLCeqnLnPdAf
                   QM++E+kennL+Ee+LgK++sAVGSAQLLmSQKfqQFr+LCeqnLnPdA+
    KIAA0964   831 QMDKETKENNLSEEVLGKVLSAVGSAQLLMSQKFQQFRGLCEQNLNPDAN 880  

                   PrPTaQDLAGFWDLLQLSIEdismKFdELyqLKANsWklletPlKdKeEk
                   PrPTaQDLAGFWDLLQLSIEdismKFdELy+LKANsW+l+etP+K+KeEk
    KIAA0964   881 PRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLVETPEKRKEEK 930  

                   kaPPPVPKKPAkgkAalvrerSldavdkQRQEARKRLLAAKRAASvRqnS
                   k+PPPVPKKPAk+k a++r++++da dkQRQEARKRLLAAKRAASvRqnS
    KIAA0964   931 KPPPPVPKKPAKSKPAVSRDKASDASDKQRQEARKRLLAAKRAASVRQNS 980  

                   ATESAdSIEIYiPEAQTRL<-*
                   ATESAdSIEIY+PEAQTRL   
    KIAA0964   981 ATESADSIEIYVPEAQTRL    999  

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