# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hj06154.fasta.huge -Q ../query/KIAA0964.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0964, 999 aa
 vs ./tmplib.23663 library

1986506 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 9.9373+/-0.00885; mu= -5.4610+/- 0.599
 mean_var=332.1648+/-78.654, 0's: 0 Z-trim: 2  B-trim: 0 in 0/40
 Lambda= 0.070372

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 39, opt: 27, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0008  ( 876 res)   ha00171s2                   ( 876)  281 42.8 0.00023


>>KIAA0008  ( 876 res)   ha00171s2                        (876 aa)
 initn: 191 init1: 191 opt: 281  Z-score: 170.2  bits: 42.8 E(): 0.00023
Smith-Waterman score: 335;  25.450% identity (55.180% similar) in 444 aa overlap (576-988:209-629)

         550       560       570       580       590       600     
KIAA09 PPSTGSLSNSRTLPSSSCLVAYKKTPPPVPPRTTSKPFISVTVQSSTESAQDTYLDSQDH
                                     :: ::.  .:   .. .. .. : :     
KIAA00 SVRITRSKAKDQMEQTKIDNESDVRAIRPGPRQTSEKKVSDKEKKVVQPVMPTSLRMTRS
      180       190       200       210       220       230        

         610       620       630       640           650       660 
KIAA09 KSEVTSQSGLSNSSDSLDSSTRPPSVTRGGVAPAPEAPEP----PPKHAALKSEQGTLTS
        .....:   . ::    ...: : :::..    ::.  :    : :..  : ..:   .
KIAA00 ATQAAKQVPRTVSS----TTARKP-VTRAANENEPEGKVPSKGRPAKNVETKPDKGISCK
      240       250            260       270       280       290   

             670       680       690       700       710       720 
KIAA09 SESHPEAAPKRKLSSIGIQERTRRNGSHLSEDNGPKAIDVMAPSSESSVPSHSMSSRRDT
        .:. ..  ..  .. :..     .:   . .: :.   .   ...: .:.  : .  : 
KIAA00 VDSEENTLNSQTNATSGMNP----DGVLSKMENLPEINTAKIKGKNSFAPKDFMFQPLD-
           300       310           320       330       340         

             730       740        750       760       770       780
KIAA09 DSDTQDANDSSCKSSERSL-PDCTPHPNSISIDAGPRQAPKIAQIKRNLSYGDNSDPALE
          : ...  . .:..  : :. :  : .  .: .  :: :    ..  .:. ..    .
KIAA00 GLKTYQVTPMTPRSANAFLTPSYTWTPLKTEVDES--QATKEILAQKCKTYSTKT-IQQD
      350       360       370       380         390       400      

                  790                800         810               
KIAA09 ASSLPPP-DP---WLE---------TSSSSPAEPAQ--PGACRRDGY---------WFLK
       ...:: :  :   : :         :...  . : .  :.  : .:          .: .
KIAA00 SNKLPCPLGPLTVWHEEHVLNKNEATTKNLNGLPIKEVPSLERNEGRIAQPHHGVPYFRN
         410       420       430       440       450       460     

        820       830       840       850       860       870      
KIAA09 LLQAETERLEGWCCQMDKETKENNLSEEVLGKVLSAVGSAQLLMSQKFQQFRGLCEQNLN
       .::.:::.: . : . :..  : .. ...   . .:::...:::...:.::.:: ..   
KIAA00 ILQSETEKLTSHCFEWDRKL-ELDIPDDAKDLIRTAVGQTRLLMKERFKQFEGLVDDCEY
         470       480        490       500       510       520    

        880       890       900       910       920       930      
KIAA09 PDANPRPTAQDLAGFWDLLQLSIEDISMKFDELYHLKANSWQLVETPEKRKEEKKPPPPV
         .  . :  :: ::::.....:::.  ::..: .:. ..:: :..  ... .:.    :
KIAA00 KRGIKETTCTDLDGFWDMVSFQIEDVIHKFNNLIKLEESGWQ-VNNNMNHNMNKN----V
          530       540       550       560        570             

        940       950       960       970         980       990    
KIAA09 PKKPAKSKPAVSRDKASDASDKQRQEARKRLLAAKRAAS--VRQNSATESADSIEIYVPE
        .: . :  : :. : .::.   :  ::.:: : : :    .::.  .:.: :.      
KIAA00 FRKKVVSGIA-SKPKQDDAG---RIAARNRLAAIKNAMRERIRQEECAETAVSVIPKEVD
     580        590          600       610       620       630     

                                                                   
KIAA09 AQTRL                                                       
                                                                   
KIAA00 KIVFDAGFFRVESPVKLFSGLSVSSEGPSQRLGTPKSVNKAVSQSRNEMGIPQQTTSPEN
         640       650       660       670       680       690     




999 residues in 1 query   sequences
1986506 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:23:22 2008 done: Thu Dec 18 15:23:23 2008
 Total Scan time:  0.680 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]