hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17591893/chunk_1/iprscan-20080502-17591893.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0960 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00090.9.fs Thrombospondin type 1 domain 242.6 2.3e-72 14 PF00090.9.ls Thrombospondin type 1 domain 249.0 9.4e-72 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00090.9.ls 1/11 43 91 .. 1 55 [] 60.1 6.5e-15 PF00090.9.fs 1/14 43 91 .. 1 55 [] 58.3 6.8e-17 PF00090.9.fs 2/14 209 237 .. 1 24 [. 24.4 1.1e-06 PF00090.9.ls 2/11 209 267 .. 1 55 [] 22.6 0.00011 PF00090.9.ls 3/11 361 418 .. 1 55 [] 9.9 0.0038 PF00090.9.fs 5/14 483 539 .. 1 55 [] 20.7 1.4e-05 PF00090.9.ls 4/11 483 539 .. 1 55 [] 22.7 0.00011 PF00090.9.ls 5/11 620 675 .. 1 55 [] 18.3 0.00037 PF00090.9.ls 6/11 755 803 .. 1 55 [] 14.7 0.001 PF00090.9.fs 9/14 884 935 .. 1 55 [] 32.1 5.3e-09 PF00090.9.ls 7/11 884 935 .. 1 55 [] 34.0 4.9e-07 PF00090.9.ls 8/11 944 1007 .. 1 55 [] 2.2 0.032 PF00090.9.ls 9/11 1014 1064 .. 1 55 [] 11.1 0.0027 PF00090.9.fs 12/14 1135 1185 .. 1 55 [] 48.1 8.2e-14 PF00090.9.ls 10/11 1135 1185 .. 1 55 [] 49.9 7.7e-12 PF00090.9.ls 11/11 1263 1319 .. 1 55 [] 3.5 0.022 Alignments of top-scoring domains: PF00090.9.ls: domain 1 of 11, from 43 to 91: score 60.1, E = 6.5e-15 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s++s WS+CS+TCG+G + R+R +++p Pq +gg+ C+ ++ ++ KIAA0960 43 SEFSAWSECSKTCGSGLQHRTRHVVAP-PQ-FGGSGCPNLTE---FQ 84 aCdmmdkC<-* +C +C KIAA0960 85 VC-QSSPC 91 PF00090.9.fs: domain 1 of 14, from 43 to 91: score 58.3, E = 6.8e-17 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqelete s++s WS+CS+TCG+G + R+R +++p Pq +gg+ C+ ++ ++ KIAA0960 43 SEFSAWSECSKTCGSGLQHRTRHVVAP-PQ-FGGSGCPNLTE---FQ 84 aCdmmdkC<-* +C +C KIAA0960 85 VC-QSSPC 91 PF00090.9.fs: domain 2 of 14, from 209 to 237: score 24.4, E = 1.1e-06 *->spWseWSpCSVTCG.k....GirtRqRvc<-* s+WseWSpCS+TC ++ ++ G+r+R+R++ KIAA0960 209 SEWSEWSPCSKTCHdMvspaGTRVRTRTI 237 PF00090.9.ls: domain 2 of 11, from 209 to 267: score 22.6, E = 0.00011 *->spWseWSpCSVTCG.k....GirtRqRvcnspaPqkkggepCtgdvq s+WseWSpCS+TC ++ ++ G+r+R+R++ ++P + C++ + KIAA0960 209 SEWSEWSPCSKTCHdMvspaGTRVRTRTIR-QFPI-GSEKECPEFEE 253 eleteaC....dmmdkC<-* e+C +++d + +C KIAA0960 254 ---KEPClsqgDGVVPC 267 PF00090.9.ls: domain 3 of 11, from 361 to 418: score 9.9, E = 0.0038 *->spWseWSpCSV.TC....G.kGirtRqRvcnspaPqkkggepCtgdv spWs W pC+ + C++++G+kG + R+R++ ++ P gg+ tg+ KIAA0960 361 SPWSAWGPCTYeNCndqqGkKGFKLRKRRITNE-P--TGGSGVTGNC 404 qe.leteaCdmmdkC<-* le +C + + C KIAA0960 405 PHlLEAIPC-EEPAC 418 PF00090.9.fs: domain 5 of 14, from 483 to 539: score 20.7, E = 1.4e-05 *->spWseWSpCSVTCG....kGirtRqRvcnspaPqk.kggepCtgdvq s Ws+WS+CS TC++++++G ++R R++ + a ++gg C+ KIAA0960 483 STWSTWSSCSHTCSgkttEGKQIRARSILAYA--GeEGGIRCPNSSA 527 eleteaCdmmdkC<-* e++ C + ++C KIAA0960 528 LQEVRSC-NEHPC 539 PF00090.9.ls: domain 4 of 11, from 483 to 539: score 22.7, E = 0.00011 *->spWseWSpCSVTCG....kGirtRqRvcnspaPqk.kggepCtgdvq s Ws+WS+CS TC++++++G ++R R++ + a ++gg C+ KIAA0960 483 STWSTWSSCSHTCSgkttEGKQIRARSILAYA--GeEGGIRCPNSSA 527 eleteaCdmmdkC<-* e++ C + ++C KIAA0960 528 LQEVRSC-NEHPC 539 PF00090.9.ls: domain 5 of 11, from 620 to 675: score 18.3, E = 0.00037 *->spWseWSpCSVTCGkG.....irtRqRvcnspaPqkkggepCtgdvq +p s W++C +C +G+++ + ++R+Rv+ + P gg +Ct++ KIAA0960 620 TPYSDWTSCPSSCKEGdssirKQSRHRVIIQL-PA-NGGRDCTDPLY 664 eleteaCdmmdkC<-* e +aC+ + C KIAA0960 665 E--EKACEAPQAC 675 PF00090.9.ls: domain 6 of 11, from 755 to 803: score 14.7, E = 0.001 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepCtgdvqe..le + Ws S+C+ CG +rtR+R+ ++++ k++e C+ + + +e KIAA0960 755 TSWSKFSSCNGDCGA-VRTRKRTLVGKS---KKKEKCKNSHLYplIE 797 teaCdmmdkC<-* t+ C +C KIAA0960 798 TQYC----PC 803 PF00090.9.fs: domain 9 of 14, from 884 to 935: score 32.1, E = 5.3e-09 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepC.tgdvqelet s+Ws WS CS++CG+G+++R + + P gg pC+++d+++ + KIAA0960 884 SEWSNWSRCSKSCGSGVKVRSKWLREK-PY-NGGRPCpKLDHVN-QA 927 eaCdmmdkC<-* ++ ++ +C KIAA0960 928 QVY-EVVPC 935 PF00090.9.ls: domain 7 of 11, from 884 to 935: score 34.0, E = 4.9e-07 *->spWseWSpCSVTCGkGirtRqRvcnspaPqkkggepC.tgdvqelet s+Ws WS CS++CG+G+++R + + P gg pC+++d+++ + KIAA0960 884 SEWSNWSRCSKSCGSGVKVRSKWLREK-PY-NGGRPCpKLDHVN-QA 927 eaCdmmdkC<-* ++ ++ +C KIAA0960 928 QVY-EVVPC 935 PF00090.9.ls: domain 8 of 11, from 944 to 1007: score 2.2, E = 0.032 *->spWseWSpCSVT.......CGkGirtRqRvcnspaPqkkggepCtgd ++++WS C VT + +++CG+G++tR+ +c ++ ++ + + KIAA0960 944 WVTEPWSICKVTfvnmrenCGEGVQTRKVRCMQN------TADGPSE 984 vqe..........leteaCdmmdkC<-* ++e+ ++++ +l +++C + +C KIAA0960 985 HVEdylcdpeempLGSRVC--KLPC 1007 PF00090.9.ls: domain 9 of 11, from 1014 to 1064: score 11.1, E = 0.0027 *->spWseWSpCSVTCGkGirtRqRvcnspaPqk.kggepCtgdvqelet s+W++W++C +C ++++ RqR+ + p+ q ++g +C+ v+ KIAA0960 1014 SEWGPWTQCVLPC-NQSSFRQRSAD-PIRQPaDEGRSCPNAVE---K 1055 eaCdmmdkC<-* e+C+ + C KIAA0960 1056 EPCNLNKNC 1064 PF00090.9.fs: domain 12 of 14, from 1135 to 1185: score 48.1, E = 8.2e-14 *->spWseWSpCSVTCG.kGirtRqRvcnspaPqkkggepCtgdvqelet s+Ws+WS+CS TCG G ++R+R++ +p++ +g pC+ + + KIAA0960 1135 SDWSPWSECSQTCGlTGKMIRRRTVTQPFQ--GDGRPCPSLMDQ--S 1177 eaCdmmdkC<-* ++C +++C KIAA0960 1178 KPC-PVKPC 1185 PF00090.9.ls: domain 10 of 11, from 1135 to 1185: score 49.9, E = 7.7e-12 *->spWseWSpCSVTCG.kGirtRqRvcnspaPqkkggepCtgdvqelet s+Ws+WS+CS TCG G ++R+R++ +p++ +g pC+ + + KIAA0960 1135 SDWSPWSECSQTCGlTGKMIRRRTVTQPFQ--GDGRPCPSLMDQ--S 1177 eaCdmmdkC<-* ++C +++C KIAA0960 1178 KPC-PVKPC 1185 PF00090.9.ls: domain 11 of 11, from 1263 to 1319: score 3.5, E = 0.022 *->spWseWSpCSVTC......G.kGirtRqRvcnspaPqk.kggepCtg +Ws WS C TC ++++ G +Gi++R R + + ++ C++ KIAA0960 1263 KDWSSWSLCQLTCvngedlGfGGIQVRSRPVIIQ---ElENQHLCPE 1306 dvqeleteaCdmmdkC<-* + e t+ C C KIAA0960 1307 QMLE--TKSC-YDGQC 1319 //