hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17272576/chunk_1/iprscan-20080502-17272576.nocrc
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Query sequence: KIAA0942
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00222                                                 201.6      7e-56   1
SM00233                                                  65.4    7.1e-15   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00222     1/1      38   225 ..     1   226 []   201.6    7e-56
SM00233     1/1     275   389 ..     1    82 []    65.4  7.1e-15

Alignments of top-scoring domains:
SM00222: domain 1 of 1, from 38 to 225: score 201.6, E = 7e-56
                   *->sknrkkllsegikkfnqkPkkGiqfLqekgflakevDdspqevAkfl
                       ++  +l + +   +++  +k+ +   ++g+  ++  + ++ +Ak l
    KIAA0942    38    GVKTTRLEAHSEMGSTEILEKETPENLSNGTSSNV--EAAKRLAKRL 82   

                   ydseSadadeseteglnkkaiGdyLgeshdefnrlvLhafvdlfdFsgkd
                   y          +  ++ ++ ++++Lg+ ++ef++lv ++++++fdF+g+ 
    KIAA0942    83 Y----------QLDRFKRSDVAKHLGK-NNEFSKLVAEEYLKFFDFTGMT 121  

                   ldeALRefLesfrLPGEaQkIDRlleaFserYcecNpgvfskagkslski
                   ld++LR f++ f L GE+Q+++R+l +Fs+rY+ cNp + +         
    KIAA0942   122 LDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYCNPDTIA--------- 162  

                   qqllnaDaaYvLaYSlIMLNTDLHnpnvkkskakdiLvKMtkedFikNlr
                       + D+++ L++++++LNTDLH++n++k        KMt+++Fi Nl+
    KIAA0942   163 ----SQDGVHCLTCAIMLLNTDLHGHNIGK--------KMTCQEFIANLQ 200  

                   ginkeiddgedlprefLeelYdsIknnei<-*
                   g+n    +g d++ ++L++lY+sIkn+++   
    KIAA0942   201 GVN----EGVDFSKDLLKALYNSIKNEKL    225  

SM00233: domain 1 of 1, from 275 to 389: score 65.4, E = 7.1e-15
                   *->vikeGwLlkks............k.swkkryfvLfngvLlyyksk..
                      v k+G+L +k + + ++++++++k++wk  y+vL++ vL++ k++ +
    KIAA0942   275    VYKSGFLARKIhadmdgkktprgKrGWKTFYAVLKGTVLYLQKDEyk 321  

                   ..kpkgsipLsgc.svre.p............cFeivt.dr.tlllqAes
                   ++k   + +L+++ sv +   ++  + ++++++F+++t d+++ll+q+ s
    KIAA0942   322 peKALSEEDLKNAvSVHHaLaskatdyekkpnVFKLKTaDWrVLLFQTQS 371  

                   eeereeWvealqsaiaka<-*
                   +ee++ W++ ++ ++a     
    KIAA0942   372 PEEMQGWINKINCVAAVF    389  

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