hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17272576/chunk_1/iprscan-20080502-17272576.nocrc
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Query sequence: KIAA0942
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF01369.11.fs Sec7 domain                                    237.4    2.8e-68   1
PF01369.11.ls Sec7 domain                                    228.0    1.9e-65   1
PF00169.19.fs PH domain                                       72.3    1.5e-21   1
PF00169.19.ls PH domain                                       74.3    3.5e-19   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF01369.11.ls   1/1      40   225 ..     1   221 []   228.0  1.9e-65
PF01369.11.fs   1/1      73   225 ..    36   221 .]   237.4  2.8e-68
PF00169.19.fs   1/1     275   387 ..     1    92 []    72.3  1.5e-21
PF00169.19.ls   1/1     275   387 ..     1    92 []    74.3  3.5e-19

Alignments of top-scoring domains:
PF01369.11.ls: domain 1 of 1, from 40 to 225: score 228.0, E = 1.9e-65
                   *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle
                      +  r  +++e    +++ + k ++  +s+g     ++++++Ak+L+ 
    KIAA0942    40    KTTRLEAHSEM--GSTEILEKETPENLSNGTSSNVEAAKRLAKRLY- 83   

                   eteGLdKkaiGefLGenddfniqvLneFvkNlFdFtglpLdeALRlfLks
                    ++++  ++++ +LG+n++f++ v++e++k +FdFtg++Ld+ LR f k+
    KIAA0942    84 QLDRFKRSDVAKHLGKNNEFSKLVAEEYLK-FFDFTGMTLDQSLRYFFKA 132  

                   FRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkkaEDdIecvqpdaDsa
                   F L GE+Q+++R+l +FS rY+ c  Np ++++              D++
    KIAA0942   133 FSLVGETQERERVLIHFSNRYFYC--NPDTIASQ-------------DGV 167  

                   yvLsYSlIMLNTDLHNNpqVKkKkikMTledFieNnrrdLREENEYEELg
                   + L++++++LNTDLH +++++kK   MT+++Fi+N+             g
    KIAA0942   168 HCLTCAIMLLNTDLH-GHNIGKK---MTCQEFIANLQ------------G 201  

                   indGgDlprefLtelYesIkneei<-*
                   +n+G D++ ++L++lY+sIkne++   
    KIAA0942   202 VNEGVDFSKDLLKALYNSIKNEKL    225  

PF01369.11.fs: domain 1 of 1, from 73 to 225: score 237.4, E = 2.8e-68
                   *->kdpqdiAkfLleeteGLdKkaiGefLGenddfniqvLneFvkNlFdF
                      ++++++Ak+L+  ++++  ++++ +LG+n++f++ v++e++k +FdF
    KIAA0942    73    EAAKRLAKRLY-QLDRFKRSDVAKHLGKNNEFSKLVAEEYLK-FFDF 117  

                   tglpLdeALRlfLksFRLPGEaQkIdRileaFSerYiqcQyNpgvfsnkk
                   tg++Ld+ LR f k+F L GE+Q+++R+l +FS rY+ c  Np ++++  
    KIAA0942   118 TGMTLDQSLRYFFKAFSLVGETQERERVLIHFSNRYFYC--NPDTIASQ- 164  

                   aEDdIecvqpdaDsayvLsYSlIMLNTDLHNNpqVKkKkikMTledFieN
                               D+++ L++++++LNTDLH +++++kK   MT+++Fi+N
    KIAA0942   165 ------------DGVHCLTCAIMLLNTDLH-GHNIGKK---MTCQEFIAN 198  

                   nrrdLREENEYEELgindGgDlprefLtelYesIkneei<-*
                   +             g+n+G D++ ++L++lY+sIkne++   
    KIAA0942   199 LQ------------GVNEGVDFSKDLLKALYNSIKNEKL    225  

PF00169.19.fs: domain 1 of 1, from 275 to 387: score 72.3, E = 1.5e-21
                   *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk.
                      v+k+G+L +k + + +++++++gk++wk  y+vL+++vL++ kd+ +
    KIAA0942   275    VYKSGFLARKIhadmdgkktprGKRGWKTFYAVLKGTVLYLQKDEYk 321  

                   .......kkpkgsipLsgiqvtkvpdn.krkncFeirt.dretlllqaes
                   +++  +++++k  +++ ++   k++d++k++n+F+++t d+++ll+q+ s
    KIAA0942   322 pekalseEDLKNAVSVHHALASKATDYeKKPNVFKLKTaDWRVLLFQTQS 371  

                   eeerkeWvkaiqsair<-*
                   +ee++ W++ i+ +++   
    KIAA0942   372 PEEMQGWINKINCVAA    387  

PF00169.19.ls: domain 1 of 1, from 275 to 387: score 74.3, E = 3.5e-19
                   *->vikeGwLlkkg...........gkkswkkRyfvLfddvLlyykdkk.
                      v+k+G+L +k + + +++++++gk++wk  y+vL+++vL++ kd+ +
    KIAA0942   275    VYKSGFLARKIhadmdgkktprGKRGWKTFYAVLKGTVLYLQKDEYk 321  

                   .......kkpkgsipLsgiqvtkvpdn.krkncFeirt.dretlllqaes
                   +++  +++++k  +++ ++   k++d++k++n+F+++t d+++ll+q+ s
    KIAA0942   322 pekalseEDLKNAVSVHHALASKATDYeKKPNVFKLKTaDWRVLLFQTQS 371  

                   eeerkeWvkaiqsair<-*
                   +ee++ W++ i+ +++   
    KIAA0942   372 PEEMQGWINKINCVAA    387  

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