hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17155208/chunk_1/iprscan-20080502-17155208.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0935 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01074.12.ls Glycosyl hydrolases family 38 N-termi 421.0 1.5e-123 1 PF01074.12.fs Glycosyl hydrolases family 38 N-termi 419.2 5.4e-123 1 PF07748.3.fs Glycosyl hydrolases family 38 C-termi 347.3 3.1e-102 1 PF07748.3.ls Glycosyl hydrolases family 38 C-termi 344.7 1.4e-100 1 PF09261.1.ls Alpha mannosidase, middle domain 105.0 2.1e-28 1 PF09261.1.fs Alpha mannosidase, middle domain 103.0 8.1e-28 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01074.12.ls 1/1 26 350 .. 1 339 [] 421.0 1.5e-123 PF01074.12.fs 1/1 26 350 .. 1 339 [] 419.2 5.4e-123 PF09261.1.fs 1/1 354 437 .. 1 90 [] 103.0 8.1e-28 PF09261.1.ls 1/1 354 437 .. 1 90 [] 105.0 2.1e-28 PF07748.3.fs 1/1 473 935 .. 1 566 [. 347.3 3.1e-102 PF07748.3.ls 1/1 473 947 .. 1 634 [] 344.7 1.4e-100 Alignments of top-scoring domains: PF01074.12.ls: domain 1 of 1, from 26 to 350: score 421.0, E = 1.5e-123 *->kvhlvgHsHiDvaWLwtvdetYyGsnnIqrrkvqrtifsnvlklldr +++v+HsH+Dv+W tv+e + r++++++ + +v+++l r KIAA0935 26 RAFVVPHSHMDVGWVYTVQESM-------RAYAANV-YTSVVEELAR 64 ypefrFyiqseaqfyewwwed.qpelfkkiVKklVaeGrlEpvGGgWVep +rF i++e+ f+ ww+ +++++k +V++l++eGrlE+v Gg V++ KIAA0935 65 GQQRRF-IAVEQEFFRLWWDGvASDQQKYQVRQLLEEGRLEFVIGGQVMH 113 DenlpsgeSliRQllyGqrffkeeFGcvrprvgWlPDpFGySatlPqilk De++++ ++ i Ql++G++f++e+FG +rp+++W++DpFG Sat P +++ KIAA0935 114 DEAVTHLDDQILQLTEGHGFLYETFG-IRPQFSWHVDPFGASATTPTLFA 162 qaGidyfltqrlhwndknkfaeqphleFiWrgsdGltgeseilThmlpfd +aG++ +l +r+++++k ++e l+F+Wrgs +l++ +ei+Th+++ + KIAA0935 163 LAGFNAHLGSRIDYDLKAAMQEARGLQFVWRGSPSLSERQEIFTHIMDQY 212 yydiphtCGpdpty......gfqfDFkrmpgeslcdddpivdpe.itdyN +y++p+ +++ ++++gf+++++++++ ++d ++ +++e++t +N KIAA0935 213 SYCTPS------HIpfsnrsGFYWNGVAVFPKPPPDGVYPNMSEpVTPAN 256 VkeraedlldqakkyadktrtnhvLlpfGdGFrYenaEwDggggptdell ++ +ae+l++++k+ a+++rt+hvL+p+G++ +++na ++ ++d ll KIAA0935 257 INLYAEALVANVKQRAAWFRTPHVLWPWGCDKQFFNA--SVQFANMDPLL 304 eyinrlqelpglpkvqygTpsdYFdaleeeaaanetwptkdsgdfptyag ++in +++ + ++ vqy+T+ dYF al++ n+tw+++d++df +y+ KIAA0935 305 DHIN-SHAAELGVSVQYATLGDYFRALHA---LNVTWRVRDHHDFLPYST 350 <-* KIAA0935 - - PF01074.12.fs: domain 1 of 1, from 26 to 350: score 419.2, E = 5.4e-123 *->kvhlvgHsHiDvaWLwtvdetYyGsnnIqrrkvqrtifsnvlklldr +++v+HsH+Dv+W tv+e + r++++++ + +v+++l r KIAA0935 26 RAFVVPHSHMDVGWVYTVQESM-------RAYAANV-YTSVVEELAR 64 ypefrFyiqseaqfyewwwed.qpelfkkiVKklVaeGrlEpvGGgWVep +rF i++e+ f+ ww+ +++++k +V++l++eGrlE+v Gg V++ KIAA0935 65 GQQRRF-IAVEQEFFRLWWDGvASDQQKYQVRQLLEEGRLEFVIGGQVMH 113 DenlpsgeSliRQllyGqrffkeeFGcvrprvgWlPDpFGySatlPqilk De++++ ++ i Ql++G++f++e+FG +rp+++W++DpFG Sat P +++ KIAA0935 114 DEAVTHLDDQILQLTEGHGFLYETFG-IRPQFSWHVDPFGASATTPTLFA 162 qaGidyfltqrlhwndknkfaeqphleFiWrgsdGltgeseilThmlpfd +aG++ +l +r+++++k ++e l+F+Wrgs +l++ +ei+Th+++ + KIAA0935 163 LAGFNAHLGSRIDYDLKAAMQEARGLQFVWRGSPSLSERQEIFTHIMDQY 212 yydiphtCGpdpty......gfqfDFkrmpgeslcdddpivdpe.itdyN +y++p+ +++ ++++gf+++++++++ ++d ++ +++e++t +N KIAA0935 213 SYCTPS------HIpfsnrsGFYWNGVAVFPKPPPDGVYPNMSEpVTPAN 256 VkeraedlldqakkyadktrtnhvLlpfGdGFrYenaEwDggggptdell ++ +ae+l++++k+ a+++rt+hvL+p+G++ +++na ++ ++d ll KIAA0935 257 INLYAEALVANVKQRAAWFRTPHVLWPWGCDKQFFNA--SVQFANMDPLL 304 eyinrlqelpglpkvqygTpsdYFdaleeeaaanetwptkdsgdfptyag ++in +++ + ++ vqy+T+ dYF al++ n+tw+++d++df +y+ KIAA0935 305 DHIN-SHAAELGVSVQYATLGDYFRALHA---LNVTWRVRDHHDFLPYST 350 <-* KIAA0935 - - PF09261.1.fs: domain 1 of 1, from 354 to 437: score 103.0, E = 8.1e-28 *->EyHrGyYTSrpalKrlnRqlEslLraaElLsslasilggdnqenevi + ++G+YTSr+ lK+l R+++ lL+a E +++ + + +++++ KIAA0935 354 QAWTGFYTSRSSLKGLARRASALLYAGESMFTRYLWPAPRGH----- 395 lkdykypkeeLeelWkalllnQFHDilPGssiqeVydDyakrl<-* +d ++ ++L++l++a++ +Q+HD+++G++ ++V d+ya +l KIAA0935 396 -LDPTWALQQLQQLRWAVSEVQHHDAITGTESPKVRDMYATHL 437 PF09261.1.ls: domain 1 of 1, from 354 to 437: score 105.0, E = 2.1e-28 *->EyHrGyYTSrpalKrlnRqlEslLraaElLsslasilggdnqenevi + ++G+YTSr+ lK+l R+++ lL+a E +++ + + +++++ KIAA0935 354 QAWTGFYTSRSSLKGLARRASALLYAGESMFTRYLWPAPRGH----- 395 lkdykypkeeLeelWkalllnQFHDilPGssiqeVydDyakrl<-* +d ++ ++L++l++a++ +Q+HD+++G++ ++V d+ya +l KIAA0935 396 -LDPTWALQQLQQLRWAVSEVQHHDAITGTESPKVRDMYATHL 437 PF07748.3.fs: domain 1 of 1, from 473 to 935: score 347.3, E = 3.1e-102 *->epvvvfNpLawtrnevVripvsspnvsv.desgeiteailaeedsgk + v+NpLawt++ +V+++v++p+v+v+de g+ KIAA0935 473 HFASVYNPLAWTVTTIVTLTVGFPGVRVtDEA-------------GH 506 pvesQivpvpsiveelrytaylgrsrtsttkyellFllaevPplGyatyk pv+sQi++ s++ +++y+ll+ l+++P+l y++y+ KIAA0935 507 PVPSQIQN----------------STETPSAYDLLI-LTTIPGLSYRHYS 539 ikkvakteevnelpsakaeislsnelslsqpie.kvss.fvkkddevils i+++a +e ++p a+++++l++ l+ + ++ +++ +v + KIAA0935 540 IRPTAGAQEGTQEPAATVASTLQFGRRLR--RRtSHAGrY-----LVPV- 581 errleNgylkvefdpdtGlltsiyDkengrevlaegagngvgnqfqlYed N+++ v +d dt l++si+ ++++r+v v ++f+ Y KIAA0935 582 ----ANDCYIVLLDQDTNLMHSIWERQSNRTVR-------VTQEFLEY-- 618 kPlyWaDAWDidgdyeekplelqedsgaylfrpngplrasirvkrkfave + ++gd ++ p +s++ylf p g + + ++ KIAA0935 619 ----H-----VNGDVKQGP-----ISDNYLFTP-GKAAVP--------AW 645 ekvplvvvdGelvqevhqsesswisqvirlyagstrlyn.q......lld e+v++++v G+lv+e++q+++ ++ + + ya +rl++ +++++++ll+ KIAA0935 646 EAVEMEIVAGQLVTEIRQYFYRNMTAQNYTYAIRSRLTHvPqghdgeLLC 695 priefeteVdpwperekigkeLkvrFptdirsdkafYedqfGrverkRrr +rie e++ +p+ +++e ++r++t+++s+++ Y+d +G+++++R KIAA0935 696 HRIEQEYQAGPLE----LNREAVLRTSTNLNSQQVIYSDNNGYQMQRR-- 739 derlpthlnvnetswegayyEvpahrfiddsekRkpgYGvslLndskyGg p+ + vn++ ++ +yy++++ +f++d+++R ++lL+++++G KIAA0935 740 ----PYVSYVNNS-IARNYYPMVQSAFMEDGKSR-----LVLLSERAHGI 779 ssSirelaqdGqleLsLlRlsPtyPdpsaDAldGrhlfegLnenkctnty ss ++ +Gq+e++L+R +++ + l+++L+ KIAA0935 780 SS----QG-NGQVEVMLHR------RLWNN--FDWDLGYNLTL-----ND 811 aLyphggswvsagvvkeayasypSllrrlasqeLnaPllvffteegdesa + ++h+ w+ +g + +a r++++++L++ ++v+f + ++ + KIAA0935 812 TSVVHPVLWLLLGSWSLTTAL-----RQRSALALQHRPVVLFGDLAGTAP 856 igsgaallssvsgleltpelplsvhlltlildaiKlAeDg.......... +g++++ +v+ lp+++hl+ l ++ ++++ ++++++++ +++ KIAA0935 857 KLPGPQQQEAVT-------LPPNLHLQILSIPGWRYSSNHtehsqnlrkg 899 ..eeleasdglvLrryeslgergeatlrtlsgpvasvtvnl<-* ++ e++a+ vL+r+ +l+e+ge+ +ls+p vtvnl KIAA0935 900 hrGEAQADLRRVLLRLYHLYEVGEDP--VLSQP---VTVNL 935 PF07748.3.ls: domain 1 of 1, from 473 to 947: score 344.7, E = 1.4e-100 *->epvvvfNpLawtrnevVripvsspnvsv.desgeiteailaeedsgk + v+NpLawt++ +V+++v++p+v+v+de g+ KIAA0935 473 HFASVYNPLAWTVTTIVTLTVGFPGVRVtDEA-------------GH 506 pvesQivpvpsiveelrytaylgrsrtsttkyellFllaevPplGyatyk pv+sQi++ s++ +++y+ll+ l+++P+l y++y+ KIAA0935 507 PVPSQIQN----------------STETPSAYDLLI-LTTIPGLSYRHYS 539 ikkvakteevnelpsakaeislsnelslsqpie.kvss.fvkkddevils i+++a +e ++p a+++++l++ l+ + ++ +++ +v + KIAA0935 540 IRPTAGAQEGTQEPAATVASTLQFGRRLR--RRtSHAGrY-----LVPV- 581 errleNgylkvefdpdtGlltsiyDkengrevlaegagngvgnqfqlYed N+++ v +d dt l++si+ ++++r+v v ++f+ Y KIAA0935 582 ----ANDCYIVLLDQDTNLMHSIWERQSNRTVR-------VTQEFLEY-- 618 kPlyWaDAWDidgdyeekplelqedsgaylfrpngplrasirvkrkfave + ++gd ++ p +s++ylf p g + + ++ KIAA0935 619 ----H-----VNGDVKQGP-----ISDNYLFTP-GKAAVP--------AW 645 ekvplvvvdGelvqevhqsesswisqvirlyagstrlyn.q......lld e+v++++v G+lv+e++q+++ ++ + + ya +rl++ +++++++ll+ KIAA0935 646 EAVEMEIVAGQLVTEIRQYFYRNMTAQNYTYAIRSRLTHvPqghdgeLLC 695 priefeteVdpwperekigkeLkvrFptdirsdkafYedqfGrverkRrr +rie e++ +p+ +++e ++r++t+++s+++ Y+d +G+++++R KIAA0935 696 HRIEQEYQAGPLE----LNREAVLRTSTNLNSQQVIYSDNNGYQMQRR-- 739 derlpthlnvnetswegayyEvpahrfiddsekRkpgYGvslLndskyGg p+ + vn++ ++ +yy++++ +f++d+++R ++lL+++++G KIAA0935 740 ----PYVSYVNNS-IARNYYPMVQSAFMEDGKSR-----LVLLSERAHGI 779 ssSirelaqdGqleLsLlRlsPtyPdpsaDAldGrhlfegLnenkctnty ss ++ +Gq+e++L+R +++ + l+++L+ KIAA0935 780 SS----QG-NGQVEVMLHR------RLWNN--FDWDLGYNLTL-----ND 811 aLyphggswvsagvvkeayasypSllrrlasqeLnaPllvffteegdesa + ++h+ w+ +g + +a r++++++L++ ++v+f + ++ + KIAA0935 812 TSVVHPVLWLLLGSWSLTTAL-----RQRSALALQHRPVVLFGDLAGTAP 856 igsgaallssvsgleltpelplsvhlltlildaiKlAeDg.......... +g++++ +v+ lp+++hl+ l ++ ++++ ++++++++ +++ KIAA0935 857 KLPGPQQQEAVT-------LPPNLHLQILSIPGWRYSSNHtehsqnlrkg 899 ..eeleasdglvLrryeslgergeatlrtlsgpvasvtvnltnllErlla ++ e++a+ vL+r+ +l+e+ge+ +ls+p vtvnl + ++ KIAA0935 900 hrGEAQADLRRVLLRLYHLYEVGEDP--VLSQP---VTVNLEVNFPTP-- 942 vvslketsLtGnqelklrlkwktkhPavGegkneeksrgevqdeevevtL KIAA0935 - -------------------------------------------------- - kPfEIrTfr<-* I+T+ KIAA0935 943 ----IQTIS 947 //