hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17103878/chunk_1/iprscan-20080502-17103878.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0932 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00042 819.4 7.5e-242 5 SM00235 189.6 3e-52 1 SM00179 97.6 1.4e-24 2 SM00181 66.7 3e-15 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00235 1/1 218 360 .. 1 204 [] 189.6 3e-52 SM00042 1/5 414 526 .. 1 144 [] 161.0 1.2e-43 SM00042 2/5 527 639 .. 1 144 [] 173.9 1.6e-47 SM00179 1/2 639 680 .. 1 34 [] 55.6 6.5e-12 SM00181 1/2 642 680 .. 1 32 [] 37.5 1.8e-06 SM00042 3/5 683 795 .. 1 144 [] 185.2 6e-51 SM00179 2/2 795 835 .. 1 34 [] 42.1 7.6e-08 SM00181 2/2 798 835 .. 1 32 [] 29.1 0.00059 SM00042 4/5 839 951 .. 1 144 [] 159.1 4.4e-43 SM00042 5/5 952 1068 .. 1 144 [] 140.2 2.2e-37 Alignments of top-scoring domains: SM00235: domain 1 of 1, from 218 to 360: score 189.6, E = 3e-52 *->gskrWpk.tvpYridryfrpsnytsslspeevkltstvreaiarAfq +++Wp++++pY+i +++++ +r+ +++A++ KIAA0932 218 TERIWPGgVIPYVI---------GGNFTGS-------QRAIFKQAMR 248 eWsdvTclrFvevtsegtadiyIsFgsgdhvrigdsGcfDgpgGetlsha +W+++Tc++F e+t + +I+F ++ +Gc+ s++ KIAA0932 249 HWEKHTCVTFIERT---DEESFIVFSYRT------CGCC--------SYV 281 grpgryyfpgigGdqhfslqkSdenwClgfgpgtnlfgvaaHElGHALGl gr g gG q +s+ + +C++fg ++aHElGH++G+ KIAA0932 282 GRRG-------GGPQAISI----GKNCDKFG-------IVAHELGHVVGF 313 yHeqsRsDGGdkRDnymyinyqnidpgsasernFdlssykidqddslgga +He++R+D RD++++i +ni+pg +e+nF ++ +++slg KIAA0932 314 WHEHTRPD----RDQHVTIIRENIQPG--QEYNFLKMEAG--EVSSLG-- 353 dipydYGs<-* yd+ s KIAA0932 354 -ETYDFDS 360 SM00042: domain 1 of 5, from 414 to 526: score 161.0, E = 1.2e-43 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CG tl +++ G ++ P++Pn+ Yp+ ++CvW+Is++pG KIAA0932 414 CGETLQDTT------GNFSAPGFPNG-----YPSYSHCVWRISVTPG 449 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG +i L+Ft+ +dl s+ C+yDyve++DG++ ++pllG KIAA0932 450 EKIVLNFTS---MDLFKSRL---------CWYDYVEVRDGYW-RKAPLLG 486 ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav rfCG++ +++++s+ ++++v+F+s s++ ++GF a Y+a+ KIAA0932 487 ----RFCGDKipEpLVST-DSRLWVEFRSSSNIL-----GKGFFAAYEAT 526 <-* KIAA0932 - - SM00042: domain 2 of 5, from 527 to 639: score 173.9, E = 1.6e-47 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+++ + G i+SPnYP++ Y +++eCvW+I + +G KIAA0932 527 CGGDMNKDA------GQIQSPNYPDD-----YRPSKECVWRIMVSEG 562 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG +++ L+F+ F++E +d+ C+yDy+e++DGp+ + s l+G KIAA0932 563 FHVGLTFQA---FEIERHDS---------CAYDYLEVRDGPT-EESALIG 599 ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav fCG+e+++++ sS sN+++++FvsD+s++ k GF a+++ + KIAA0932 600 ----HFCGYEkpEdVKSS-SNRLWMKFVSDGSIN-----KAGFAANFFKE 639 <-* KIAA0932 - - SM00179: domain 1 of 2, from 639 to 680: score 55.6, E = 6.5e-12 *->DiDEC......pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe +DEC+ ++++ C + +C+N+ GSY+C C+pGy+ +++ Ce KIAA0932 639 EVDECswpdhgGCEH-----RCVNtLGSYKCaCDPGYElaadkKMCE 680 <-* KIAA0932 - - SM00181: domain 1 of 2, from 642 to 680: score 37.5, E = 1.8e-06 *->eCa.....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe eC+ +++++C++ +C+++ +sy+C C pGy++ +++ Ce KIAA0932 642 ECSwpdhgGCEH-------RCVntlgSYKCaCD-PGYELaadkkMCE 680 <-* KIAA0932 - - SM00042: domain 3 of 5, from 683 to 795: score 185.2, E = 6e-51 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg +t + GtitSP++P+ Yp n++CvW+++ap KIAA0932 683 CGGFITKLN------GTITSPGWPKE-----YPTNKNCVWQVVAPAQ 718 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG yri+L+F+ F+lE++d C yD+ve++ G s +++l+G KIAA0932 719 YRISLQFEV---FELEGNDV---------CKYDFVEVRSGLS-PDAKLHG 755 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< rfCGse+p++i+S+sN+m+v+F+sD++v+ krGF+a+++++ KIAA0932 756 ----RFCGSEtPeVITSQSNNMRVEFKSDNTVS-----KRGFRAHFFSD 795 -* KIAA0932 - - SM00179: domain 2 of 2, from 795 to 835: score 42.1, E = 7.6e-08 *->DiDEC.....pCqnGGptgtCiN.vGSYrC.CppGyt.....rnCe< D DEC ++++ Cq+ C+N+ GSY C+C+ Gy + +++ C+ KIAA0932 795 DKDECakdngGCQH-----ECVNtFGSYLCrCRNGYWlhengHDCK 835 -* KIAA0932 - - SM00181: domain 2 of 2, from 798 to 835: score 29.1, E = 0.00059 *->eCa....pCsnGgtEqnGtCi....sytC.CpgpGytg.....rCe< eCa+++++C++ +C+++ +sy C+C+ +Gy ++++++ C+ KIAA0932 798 ECAkdngGCQH-------ECVntfgSYLCrCR-NGYWLhenghDCK 835 -* KIAA0932 - - SM00042: domain 4 of 5, from 839 to 951: score 159.1, E = 4.4e-43 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG C + + + Gt+ SPn+P++ Yp+ eC+W+Is + G KIAA0932 839 CAHKISSVE------GTLASPNWPDK-----YPSRRECTWNISSTAG 874 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG +r++L+F + F++E +++ C+yD++e yDGp+ +p lG KIAA0932 875 HRVKLTFNE---FEIEQHQE---------CAYDHLEMYDGPD-SLAPILG 911 ntearfCGse..p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav rfCGs+++ +++ S ++sm+++F sD svq ++GF+a +s++ KIAA0932 912 ----RFCGSKkpDpTVAS-GSSMFLRFYSDASVQ-----RKGFQAVHSTE 951 <-* KIAA0932 - - SM00042: domain 5 of 5, from 952 to 1068: score 140.2, E = 2.2e-37 *->CGgtltasssDfkesGtitSPnYPnspsgesYpnnleCvWtIsappG CGg+l+a+ + + +++ + ++ +Yp+ + C W+I+a++G KIAA0932 952 CGGRLKAEVQ---TKELYSHAQFGDN----NYPSEARCDWVIVAEDG 991 yrieLkFtdhdkFdlEssdndgggrfvpeCryDyveiyDGpsktsspllG y +eL+F F++E + + C+yDy e yDG++ s+p+lG KIAA0932 992 YGVELTFRT---FEVEEEAD---------CGYDYMEAYDGYD-SSAPRLG 1028 ntearfCGse.p.iisSssNsmtvtFvsDssvqgkgktkrGFsarYsav< rfCGs++ + i+S+++s++++F++D +++ k+GF+arY+++ KIAA0932 1029 ----RFCGSGpLeEIYSAGDSLMIRFRTDDTIN-----KKGFHARYTST 1068 -* KIAA0932 - 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