hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-17084937/chunk_1/iprscan-20080502-17084937.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0931 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 146.4 7.1e-41 18 PF00560.23.fs Leucine Rich Repeat 118.2 2.2e-32 15 PF00481.12.fs Protein phosphatase 2C 94.9 1.6e-26 1 PF00481.12.ls Protein phosphatase 2C 79.6 9.4e-21 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 3/18 302 323 .. 1 24 [] 8.4 7.1 PF00560.23.fs 3/15 325 346 .. 1 24 [] 12.8 0.019 PF00560.23.ls 4/18 325 346 .. 1 24 [] 14.7 0.31 PF00560.23.fs 4/15 348 369 .. 1 24 [] 14.7 0.0056 PF00560.23.ls 5/18 348 369 .. 1 24 [] 16.6 0.083 PF00560.23.ls 6/18 371 392 .. 1 24 [] 8.7 6.2 PF00560.23.ls 9/18 442 464 .. 1 24 [] 13.0 0.97 PF00560.23.fs 6/15 442 464 .. 1 24 [] 11.1 0.054 PF00560.23.ls 12/18 528 550 .. 1 24 [] 13.8 0.57 PF00560.23.fs 9/15 528 550 .. 1 24 [] 12.0 0.032 PF00560.23.ls 13/18 551 572 .. 1 24 [] 8.9 5.7 PF00560.23.ls 14/18 573 595 .. 1 24 [] 11.8 1.6 PF00560.23.fs 12/15 604 625 .. 1 24 [] 15.2 0.0043 PF00560.23.ls 15/18 604 625 .. 1 24 [] 17.0 0.062 PF00481.12.ls 1/1 719 961 .. 1 303 [] 79.6 9.4e-21 PF00481.12.fs 1/1 807 961 .. 119 303 .] 94.9 1.6e-26 Alignments of top-scoring domains: PF00560.23.ls: domain 3 of 18, from 302 to 323: score 8.4, E = 7.1 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+ L+Ls+ N +l g +p l KIAA0931 302 QLKGLNLSH-N-KL-GLFPILLcEI 323 PF00560.23.fs: domain 3 of 15, from 325 to 346: score 12.8, E = 0.019 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+eL+Ls+ N ++ +lps ++nl KIAA0931 325 TLTELNLSC-N-GFH-DLPSQIgNL 346 PF00560.23.ls: domain 4 of 18, from 325 to 346: score 14.7, E = 0.31 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+eL+Ls+ N ++ +lps ++nl KIAA0931 325 TLTELNLSC-N-GFH-DLPSQIgNL 346 PF00560.23.fs: domain 4 of 15, from 348 to 369: score 14.7, E = 0.0056 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL++L L+g N lt +lp++l+nl KIAA0931 348 NLQTLCLDG-N-FLT-TLPEELgNL 369 PF00560.23.ls: domain 5 of 18, from 348 to 369: score 16.6, E = 0.083 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL++L L+g N lt +lp++l+nl KIAA0931 348 NLQTLCLDG-N-FLT-TLPEELgNL 369 PF00560.23.ls: domain 6 of 18, from 371 to 392: score 8.7, E = 6.2 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L +L +s N +++ +p+ ++l KIAA0931 371 QLSSLGISF-N-NFS-QIPEVYeKL 392 PF00560.23.ls: domain 9 of 18, from 442 to 464: score 13.0, E = 0.97 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +++++dL++ N +lt +l+ s+l +l KIAA0931 442 HITHVDLRD-N-RLT-DLDLSsLcSL 464 PF00560.23.fs: domain 6 of 15, from 442 to 464: score 11.1, E = 0.054 *->nLeeLdLsgCNpsltgslpss.l.nl<-* +++++dL++ N +lt +l+ s+l +l KIAA0931 442 HITHVDLRD-N-RLT-DLDLSsLcSL 464 PF00560.23.ls: domain 12 of 18, from 528 to 550: score 13.8, E = 0.57 *->nLeeLdLsgCNpsltgslpss.l.nl<-* ++e+Ld+s+ N lt ++p+ l++l KIAA0931 528 KIEVLDVSY-N-LLT-EVPVRiLsSL 550 PF00560.23.fs: domain 9 of 15, from 528 to 550: score 12.0, E = 0.032 *->nLeeLdLsgCNpsltgslpss.l.nl<-* ++e+Ld+s+ N lt ++p+ l++l KIAA0931 528 KIEVLDVSY-N-LLT-EVPVRiLsSL 550 PF00560.23.ls: domain 13 of 18, from 551 to 572: score 8.9, E = 5.7 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++L L++ N +++ +lp +++ KIAA0931 551 SLRKLMLGH-N-HVQ-NLPTLVeHI 572 PF00560.23.ls: domain 14 of 18, from 573 to 595: score 11.8, E = 1.6 *->nLeeLdLsgCNpsltgslpss.l.nl<-* Le+LdL++ N lt lp+ +++ KIAA0931 573 PLEVLDLQH-N-ALT-RLPDTlFsKA 595 PF00560.23.fs: domain 12 of 15, from 604 to 625: score 15.2, E = 0.0043 *->nLeeLdLsgCNpsltgslpssl.nl<-* +LeeL+Lsg N +l +++p + n+ KIAA0931 604 QLEELNLSG-N-KL-KTIPTTIaNC 625 PF00560.23.ls: domain 15 of 18, from 604 to 625: score 17.0, E = 0.062 *->nLeeLdLsgCNpsltgslpssl.nl<-* +LeeL+Lsg N +l +++p + n+ KIAA0931 604 QLEELNLSG-N-KL-KTIPTTIaNC 625 PF00481.12.ls: domain 1 of 1, from 719 to 961: score 79.6, E = 9.4e-21 *->ldvgvsrmqgwrksmeDahialknlnssssgkdsisffavfDghgGs + +g+ +m g r ++ + +a +++ ++++ av+++ G+ KIAA0931 719 WSHGLAEMAGQRNKLCVSALAMDSF--------AEGVGAVYGMFDGD 757 qaakyagkhleka.l.tilaerksfpegnpnEwklsdledalrksflead ++++ + l ++ ++l e + ++ ++ + ++fl KIAA0931 758 RNEELPR--LLQCtMaDVLLEEVQQSTNDT---------VFMANTFLV-- 794 tdeelrsaadsanhvltkedlssGsTAvvalirgqkk......lLyvANv +r+ l + ++ Gs+A++++ir+++ ++ ++ +L vANv KIAA0931 795 ---SHRK--------LGMAGQKLGSSALLCYIRPDTAdpassfSLTVANV 833 GDSravLcrngnaiklvtqLtedHkps.dedEkrRIeaaGGfvsrvsgng G+++avLcr+g+++ +L++ + ++d++E+ R+++ + + KIAA0931 834 GTCQAVLCRGGKPV----PLSKVFSLEqDPEEAQRVKDQKAIITE---DN 876 RvnGvfLavSRAfGDfelKpnvtlgpelslerGifseeqpVsaePdvtss +vnGv +R++G ++l+p ++ + P+++ s KIAA0931 877 KVNGV-TCCTRMLGCTYLYP-------------------WILPKPHIS-S 905 tkiteskDeFliLAcDGlWDvvsdqeavdivrselsdgnksagspmeaae t++t + De liL++ lW+++s+ eav vr + p+ aa+ KIAA0931 906 TPLTIQ-DELLILGNKALWEHLSYTEAVNAVRHVQD--------PLAAAK 946 kLvdeAiargseDni<-* kL+++A+++g++Dn+ KIAA0931 947 KLCTLAQSYGCQDNV 961 PF00481.12.fs: domain 1 of 1, from 807 to 961: score 94.9, E = 1.6e-26 *->GsTAvvalirgqkk......lLyvANvGDSravLcrngnaiklvtqL Gs+A++++ir+++ ++ ++ +L vANvG+++avLcr+g+++ +L KIAA0931 807 GSSALLCYIRPDTAdpassfSLTVANVGTCQAVLCRGGKPV----PL 849 tedHkps.dedEkrRIeaaGGfvsrvsgngRvnGvfLavSRAfGDfelKp ++ + ++d++E+ R+++ + ++vnGv +R++G ++l+p KIAA0931 850 SKVFSLEqDPEEAQRVKDQKAIITE---DNKVNGV-TCCTRMLGCTYLYP 895 nvtlgpelslerGifseeqpVsaePdvtsstkiteskDeFliLAcDGlWD ++ + P+++ st++t + De liL++ lW+ KIAA0931 896 -------------------WILPKPHIS-STPLTIQ-DELLILGNKALWE 924 vvsdqeavdivrselsdgnksagspmeaaekLvdeAiargseDni<-* ++s+ eav vr + p+ aa+kL+++A+++g++Dn+ KIAA0931 925 HLSYTEAVNAVRHVQD--------PLAAAKKLCTLAQSYGCQDNV 961 //