# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hh02962.fasta.huge -Q ../query/KIAA0926.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0926, 1447 aa
 vs ./tmplib.23663 library

1986058 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.0317+/-0.00703; mu= 15.3140+/- 0.477
 mean_var=198.1186+/-47.455, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.091120

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 40, opt: 28, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0955  ( 485 res)   hj05544                     ( 485)  632 96.4 1.4e-20


>>KIAA0955  ( 485 res)   hj05544                          (485 aa)
 initn: 796 init1: 350 opt: 632  Z-score: 461.6  bits: 96.4 E(): 1.4e-20
Smith-Waterman score: 825;  38.916% identity (63.054% similar) in 406 aa overlap (1077-1436:90-483)

       1050      1060      1070      1080      1090      1100      
KIAA09 LKLLDVSKIFPIAEIAEESSPEVVPVELLCVPSPASQGDLHTKPLGTDDDFWGPTGPVAT
                                     : : ::.  .. .    . .: :: : : .
KIAA09 QSHYCSVLFLSVNYLGGTFPGDICSEENQIVSSYASKVCFEIEEDYKNRQFLGPEGNVDV
      60        70        80        90       100       110         

       1110      1120      1130      1140      1150      1160      
KIAA09 EVVDKEKNLYRVHFPVAGSYRWPNTGLCFVMREAVTVEIEFCVWDQFLGEINPQH--SWM
       :..::  : : : ::.:: : :  ::: :..:. ::: : :  :.: :. .. ::  .:.
KIAA09 ELIDKSTNRYSVWFPTAGWYLWSATGLGFLVRDEVTVTIAFGSWSQHLA-LDLQHHEQWL
     120       130       140       150       160        170        

         1170       1180      1190      1200      1210      1220   
KIAA09 VAGPLLDIKAEPG-AVEAVHLPHFVALQGGHVDTSLFQMAHFKEEGMLLEKPARVELHHI
       :.:::.:. :::  ::  .:::::..::: .::.: : .::::.:::.::.:::::  . 
KIAA09 VGGPLFDVTAEPEEAVAEIHLPHFISLQG-EVDVSWFLVAHFKNEGMVLEHPARVEPFYA
      180       190       200        210       220       230       

          1230      1240      1250      1260      1270             
KIAA09 VLENPSFSPLGVLLKMIHNALRFIPVTSVVLLYHRVHPEEVTFHLYLIPSDC--------
       :::.:::: .:.::..  ..   ::.:: .:.:.. :::.. :::::.:::         
KIAA09 VLESPSFSLMGILLRIASGTRLSIPITSNTLIYYHPHPEDIKFHLYLVPSDALLTKAIDD
       240       250       260       270       280       290       

                                          1280      1290      1300 
KIAA09 ------SIR----------------------------KELELCYRSPGEDQLFSEFYVGH
             ..:                            :::.: :::::: : ::.::.:.
KIAA09 EEDRFHGVRLQTSPPMEPLNFGSSYIVSNSANLKVMPKELKLSYRSPGEIQHFSKFYAGQ
       300       310       320       330       340       350       

            1310      1320      1330      1340      1350      1360 
KIAA09 LGSGIRLQVKDKKDETLVWEALVKPGDLMPATTLIPPARIAVPSPLDAPQLLHFVDQYRE
       .   :.:.. .:.  ::::.. ::: ::. ...  ::       :...     :: . ..
KIAA09 MKEPIQLEITEKRHGTLVWDTEVKPVDLQLVAASAPP-------PFSGAA---FVKENHR
       360       370       380       390              400          

            1370       1380      1390      1400      1410      1420
KIAA09 QLIARVTSVEVVLDKLH-GQVLSQEQYERVLAENTRPSQMRKLFSLSQSWDRKCKDGLYQ
       :: ::. ... ::: :. ..::.... : :  :.:: :. . :.:. ..      : :..
KIAA09 QLQARMGDLKGVLDDLQDNEVLTENEKELVEQEKTRQSKNEALLSMVEKKGDLALDVLFR
       410       420       430       440       450       460       

             1430      1440       
KIAA09 ALKETHPHLIMELWEKGSKKGLLPLSS
       ...:  :.:.  : ..           
KIAA09 SISERDPYLVSYLRQQNL         
       470       480              




1447 residues in 1 query   sequences
1986058 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:21:43 2008 done: Thu Dec 18 15:21:44 2008
 Total Scan time:  0.830 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]