hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16583850/chunk_1/iprscan-20080502-16583850.nocrc
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Query sequence: KIAA0925
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF08954.1.ls Domain of unknown function (DUF1900)           293.4      4e-85   1
PF08954.1.fs Domain of unknown function (DUF1900)           291.5    1.5e-84   1
PF08953.1.fs Domain of unknown function (DUF1899)           144.3    5.4e-47   1
PF08953.1.ls Domain of unknown function (DUF1899)           146.3    7.5e-41   1
PF00400.22.ls WD domain, G-beta repeat                        89.4      1e-23   3
PF00400.22.fs WD domain, G-beta repeat                        83.4    1.6e-22   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF08953.1.fs   1/1       9    74 ..     1    66 []   144.3  5.4e-47
PF08953.1.ls   1/1       9    74 ..     1    66 []   146.3  7.5e-41
PF00400.22.fs   1/3      76   115 ..     1    38 []    32.9  2.7e-08
PF00400.22.ls   1/3      76   115 ..     1    38 []    34.9  2.6e-07
PF00400.22.ls   2/3     126   165 ..     1    38 []    26.9  6.7e-05
PF00400.22.fs   2/3     126   165 ..     1    38 []    24.9  4.8e-06
PF00400.22.fs   3/3     169   207 ..     1    38 []    25.6    3e-06
PF00400.22.ls   3/3     169   207 ..     1    38 []    27.6  4.2e-05
PF08954.1.fs   1/1     260   396 ..     1   138 []   291.5  1.5e-84
PF08954.1.ls   1/1     260   396 ..     1   138 []   293.4    4e-85

Alignments of top-scoring domains:
PF08953.1.fs: domain 1 of 1, from 9 to 74: score 144.3, E = 5.4e-47
                   *->rfVRsSKyRHVFGqpaKkEqCYddirvsksaWDsnfcaVNpkflAvi
                      +++RsSK+R+V+G++a +E+C+d+i+++k+++D++fcaVN++flA++
    KIAA0925     9    PQYRSSKFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNTRFLAIV 55   

                   weaaGGGaFaViPlnktGr<-*
                   +e+aGGG+F+ViPl++tGr   
    KIAA0925    56 TESAGGGSFLVIPLEQTGR    74   

PF08953.1.ls: domain 1 of 1, from 9 to 74: score 146.3, E = 7.5e-41
                   *->rfVRsSKyRHVFGqpaKkEqCYddirvsksaWDsnfcaVNpkflAvi
                      +++RsSK+R+V+G++a +E+C+d+i+++k+++D++fcaVN++flA++
    KIAA0925     9    PQYRSSKFRNVYGKVANREHCFDGIPITKNVHDNHFCAVNTRFLAIV 55   

                   weaaGGGaFaViPlnktGr<-*
                   +e+aGGG+F+ViPl++tGr   
    KIAA0925    56 TESAGGGSFLVIPLEQTGR    74   

PF00400.22.fs: domain 1 of 3, from 76 to 115: score 32.9, E = 2.7e-08
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          +   gH++ V +++++p   +++as+S+D +++iW+   
    KIAA0925    76    EPNYpKVcGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWE    115  

PF00400.22.ls: domain 1 of 3, from 76 to 115: score 34.9, E = 2.6e-07
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                          +   gH++ V +++++p   +++as+S+D +++iW+   
    KIAA0925    76    EPNYpKVcGHQGNVLDIKWNPFIDNIIASCSEDTSVRIWE    115  

PF00400.22.ls: domain 2 of 3, from 126 to 165: score 26.9, E = 6.7e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e + +l+gH+  V  v ++p   ++l+s++ D ++ iW+   
    KIAA0925   126    TEALlELhGHSRRVGLVEWHPTTNNILFSAGYDYKVLIWN    165  

PF00400.22.fs: domain 2 of 3, from 126 to 165: score 24.9, E = 4.8e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                       e + +l+gH+  V  v ++p   ++l+s++ D ++ iW+   
    KIAA0925   126    TEALlELhGHSRRVGLVEWHPTTNNILFSAGYDYKVLIWN    165  

PF00400.22.fs: domain 3 of 3, from 169 to 207: score 25.6, E = 3e-06
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ge+++ ++ Ht+ + c++f+ d g+ll + + D+++++ +   
    KIAA0925   169    GEPVkMIdCHTDVILCMSFNTD-GSLLTTTCKDKKLRVIE    207  

PF00400.22.ls: domain 3 of 3, from 169 to 207: score 27.6, E = 4.2e-05
                   *->geck.vl.gHtstVtcvafspdsgpllasgSrDgtikiWd<-*
                      ge+++ ++ Ht+ + c++f+ d g+ll + + D+++++ +   
    KIAA0925   169    GEPVkMIdCHTDVILCMSFNTD-GSLLTTTCKDKKLRVIE    207  

PF08954.1.fs: domain 1 of 1, from 260 to 396: score 291.5, E = 1.5e-84
                   *->PiatFeelDtssGvLmPfYDeDtglLYLaGKGDgnIRyyEitdeePy
                      P+ + ee+D  sG L+PfYD+Dt++LYLaGKGDgnIRyyEi+ e+Py
    KIAA0925   260    PLIE-EEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEISTEKPY 305  

                   lhylseftstepqkGlaflPKralDVskCEiaRfykLtn..nsiePiSfi
                   l+yl ef+s+ pqkGl+++PK +lDVs+CE++RfykL++ ++ iePiS+i
    KIAA0925   306 LSYLMEFRSPAPQKGLGVMPKHGLDVSACEVFRFYKLVTlkGLIEPISMI 355  

                   VPRKsselFQdDLYPdTaatWePaltAeEWlsGknkaPpliSL<-*
                   VPR+s +++Q+D+YP+T++t ePalt++EWl+G+n +P+l+SL   
    KIAA0925   356 VPRRS-DSYQEDIYPMTPGT-EPALTPDEWLGGINRDPVLMSL    396  

PF08954.1.ls: domain 1 of 1, from 260 to 396: score 293.4, E = 4e-85
                   *->PiatFeelDtssGvLmPfYDeDtglLYLaGKGDgnIRyyEitdeePy
                      P+ + ee+D  sG L+PfYD+Dt++LYLaGKGDgnIRyyEi+ e+Py
    KIAA0925   260    PLIE-EEIDGLSGLLFPFYDADTHMLYLAGKGDGNIRYYEISTEKPY 305  

                   lhylseftstepqkGlaflPKralDVskCEiaRfykLtn..nsiePiSfi
                   l+yl ef+s+ pqkGl+++PK +lDVs+CE++RfykL++ ++ iePiS+i
    KIAA0925   306 LSYLMEFRSPAPQKGLGVMPKHGLDVSACEVFRFYKLVTlkGLIEPISMI 355  

                   VPRKsselFQdDLYPdTaatWePaltAeEWlsGknkaPpliSL<-*
                   VPR+s +++Q+D+YP+T++t ePalt++EWl+G+n +P+l+SL   
    KIAA0925   356 VPRRS-DSYQEDIYPMTPGT-EPALTPDEWLGGINRDPVLMSL    396  

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