hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16414690/chunk_1/iprscan-20080502-16414690.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA0915
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00621.11.fs RhoGEF domain                                   68.8    3.9e-20   1
PF00621.11.ls RhoGEF domain                                   70.6    4.6e-18   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00621.11.fs   1/1     426   605 ..     1   207 []    68.8  3.9e-20
PF00621.11.ls   1/1     426   605 ..     1   207 []    70.6  4.6e-18

Alignments of top-scoring domains:
PF00621.11.fs: domain 1 of 1, from 426 to 605: score 68.8, E = 3.9e-20
                   *->vlkElleTEkkYvrdLeildnvym..kpLreaaisskplLtpddiet
                       l+E++++E+ Y+r+L++l +++  ++ Lr+        Ltp+d +t
    KIAA0915   426    SLFEVVTSEASYLRSLRLLTDTFVlsQALRD-------TLTPRDHHT 465  

                   iFsNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFle
                   +FsN+     +  +FL   L  r++ss           p+ + l d++ +
    KIAA0915   466 LFSNVQRVQGVSERFLA-TLLSRVRSS-----------PHISDLCDVVHA 503  

                   lkaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA
                   +    ++vY  Y++n++y +e+ ++l    +n  F  +l +++  + ++ 
    KIAA0915   504 HAVGPFSVYVDYVRNQQYQEETYSRLM--DTNVRFSAELRRLQSLPKCE- 550  

                   kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal
                        +l L+s+Ll P qRi+r   LL+ +L  t e  +ss  e+++kal
    KIAA0915   551 -----RLPLPSFLLLPFQRITRLRMLLQNILRQTEE--GSSRQENAQKAL 593  

                   dalqdlaksiNe<-*
                    a+  ++++  +   
    KIAA0915   594 GAVSKIIERCSA    605  

PF00621.11.ls: domain 1 of 1, from 426 to 605: score 70.6, E = 4.6e-18
                   *->vlkElleTEkkYvrdLeildnvym..kpLreaaisskplLtpddiet
                       l+E++++E+ Y+r+L++l +++  ++ Lr+        Ltp+d +t
    KIAA0915   426    SLFEVVTSEASYLRSLRLLTDTFVlsQALRD-------TLTPRDHHT 465  

                   iFsNiediyefhreFLkssLearisssnfedlDekkiepsaqrlGdlFle
                   +FsN+     +  +FL   L  r++ss           p+ + l d++ +
    KIAA0915   466 LFSNVQRVQGVSERFLA-TLLSRVRSS-----------PHISDLCDVVHA 503  

                   lkaeflqvYgeYcsnkpyAqelleklrqaasnpqFaefldeveassntgA
                   +    ++vY  Y++n++y +e+ ++l    +n  F  +l +++  + ++ 
    KIAA0915   504 HAVGPFSVYVDYVRNQQYQEETYSRLM--DTNVRFSAELRRLQSLPKCE- 550  

                   kddavkltLqsLLlkPvqRilrYpLLLkeLLkhtpegedssesedLkkal
                        +l L+s+Ll P qRi+r   LL+ +L  t e  +ss  e+++kal
    KIAA0915   551 -----RLPLPSFLLLPFQRITRLRMLLQNILRQTEE--GSSRQENAQKAL 593  

                   dalqdlaksiNe<-*
                    a+  ++++  +   
    KIAA0915   594 GAVSKIIERCSA    605  

//