hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16350378/chunk_1/iprscan-20080502-16350378.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0911 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00112 78.0 1.1e-18 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00112 1/2 134 237 .. 1 121 [] 52.2 6.6e-11 SM00112 2/2 260 338 .. 1 121 [] 25.8 0.0061 Alignments of top-scoring domains: SM00112: domain 1 of 2, from 134 to 237: score 52.2, E = 6.6e-11 *->vsAtDaDsgsngeNgkpgdaevvtYsils.................l + A D+D++ ++ ++ +++ +++ + + ++++ + + KIAA0911 134 LIALDKDAP--LRFAES-----FEVTVTKegeicgfkihgqnvpfdA 173 FsIdpetGtngpsLvkleiiitttkpLDREeqflkreqtdeseYtLtveA +d++tG e++i++++ LD E q + Y++t++A KIAA0911 174 VVVDKSTG---------EGVIRSKEKLDCELQ---------KDYSFTIQA 205 tDgGgpppgdssptrksqqtpplsstatvtvtVlDvNDNaP<-* D G p g++ + +s atv+++V DvN+ aP KIAA0911 206 YDCGKGPDGTNVK---------KSHKATVHIQVNDVNEYAP 237 SM00112: domain 2 of 2, from 260 to 338: score 25.8, E = 0.0061 *->vsAtDaDsgsngeNgkpgdaevvtYsils...lFsIdpetGtngpsL v A+DaD + ++ + +Y+i+ ++ +F++d+++ KIAA0911 260 VEAVDADCS--PQFSQ-----ICSYEIITpdvPFTVDKDG------- 292 vkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdsspt i+ t+ L++ + +Y Ltv+A D G + KIAA0911 293 -----YIKNTEKLNYGKE---------HQYKLTVTAYDCGKKR------- 321 rksqqtpplsstatvtvtVlDvNDNaP<-* + + v + ++ P KIAA0911 322 --------ATEDVLVKISIKP--TCTP 338 //