hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16350378/chunk_1/iprscan-20080502-16350378.nocrc
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Query sequence: KIAA0911
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00028.8.fs Cadherin domain                                 37.2    4.9e-10   3
PF00028.8.ls Cadherin domain                                 32.9      1e-06   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00028.8.ls   1/2     117   230 ..     1   107 []     9.6    0.023
PF00028.8.fs   2/3     244   333 ..     1   107 []    21.5  1.5e-05
PF00028.8.ls   2/2     244   333 ..     1   107 []    23.3   0.0008

Alignments of top-scoring domains:
PF00028.8.ls: domain 1 of 2, from 117 to 230: score 9.6, E = 0.023
                   *->ysasvpEnapvGtevl..tvtAtDaDdPlgpNgrirYsilggnp...
                      y++ v En   +t +l++ + A D+D Pl   ++     ++ ++  +
    KIAA0911   117    YHGIVTEN--DNTVLLdpPLIALDKDAPLRFAESFEVTVTKEGEicg 161  

                   .........ggwFrIdpdtGdnegiisttkpLDREeifngeYeLtveAtD
                    + ++++ + +   +d+ tG+  g+i+ ++ LD+E +    Y++t+ A D
    KIAA0911   162 fkihgqnvpFDAVVVDKSTGE--GVIRSKEKLDCELQ--KDYSFTIQAYD 207  

                   adpllasgggpplsst......atvtitVl<-*
                   +       g  p  +  +++++atv+i+V    
    KIAA0911   208 C-------GKGPDGTNvkkshkATVHIQVN    230  

PF00028.8.fs: domain 2 of 3, from 244 to 333: score 21.5, E = 1.5e-05
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgri.rYsilggnpggwF
                      y a+v E+ +   ++l+v A+DaD  +++ ++i +Y i+ +++   F
    KIAA0911   244    YKATVIEGKQ-YDSILRVEAVDADC-SPQFSQIcSYEIITPDV--PF 286  

                   rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl
                   ++d+ +G     i+ t+ L++ +    +Y Ltv A D+       g +  
    KIAA0911   287 TVDK-DGY----IKNTEKLNYGKE--HQYKLTVTAYDC-------GKKRA 322  

                   sstatvtitVl<-*
                   +  + v i++    
    KIAA0911   323 TEDVLVKISIK    333  

PF00028.8.ls: domain 2 of 2, from 244 to 333: score 23.3, E = 0.0008
                   *->ysasvpEnapvGtevltvtAtDaDdPlgpNgri.rYsilggnpggwF
                      y a+v E+ +   ++l+v A+DaD  +++ ++i +Y i+ +++   F
    KIAA0911   244    YKATVIEGKQ-YDSILRVEAVDADC-SPQFSQIcSYEIITPDV--PF 286  

                   rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl
                   ++d+ +G     i+ t+ L++ +    +Y Ltv A D+       g +  
    KIAA0911   287 TVDK-DGY----IKNTEKLNYGKE--HQYKLTVTAYDC-------GKKRA 322  

                   sstatvtitVl<-*
                   +  + v i++    
    KIAA0911   323 TEDVLVKISIK    333  

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