hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16332068/chunk_1/iprscan-20080502-16332068.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0910 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02383.9.ls SacI homology domain 518.2 8.3e-153 1 PF02383.9.fs SacI homology domain 516.4 2.9e-152 1 PF08952.1.fs Domain of unknown function (DUF1866) 287.9 1e-84 1 PF08952.1.ls Domain of unknown function (DUF1866) 289.7 5.1e-84 1 PF03372.13.ls Endonuclease/Exonuclease/phosphatase fa 160.8 3.2e-45 1 PF03372.13.fs Endonuclease/Exonuclease/phosphatase fa 158.9 1.2e-44 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02383.9.fs 1/1 95 383 .. 1 366 [] 516.4 2.9e-152 PF02383.9.ls 1/1 95 383 .. 1 366 [] 518.2 8.3e-153 PF03372.13.ls 1/1 571 902 .. 1 198 [] 160.8 3.2e-45 PF03372.13.fs 1/1 571 902 .. 1 198 [] 158.9 1.2e-44 PF08952.1.fs 1/1 903 1045 .. 1 157 [] 287.9 1e-84 PF08952.1.ls 1/1 903 1045 .. 1 157 [] 289.7 5.1e-84 Alignments of top-scoring domains: PF02383.9.fs: domain 1 of 1, from 95 to 383: score 516.4, E = 2.9e-152 *->iyGllGlIkLkggdvmLyYLivITgkskVGqigpghaIYkitdvdfi +yGllG+++L++gd mL+YL+++Tg+++VG+i+ + +++++t ++fi KIAA0910 95 AYGLLGVLRLNLGDTMLHYLVLVTGCMSVGKIQ-ESEVFRVTSTEFI 140 slnndsvdetdiekkDEarylkihPdgisTdtqeklpkhPcslLkkvLst sl+ ds de+ ++ +++kvL++ KIAA0910 141 SLRIDSSDED---------RIS--------------------EVRKVLNS 161 gtFYFSytyDltntLQrnskvlraplenlessvdradesifdiITdyner g+FYF+++ + + ++ ++ ++++ ++++++++ KIAA0910 162 GNFYFAWSASGISLDLSLN-----AHRSMQEQTTDNR------------- 193 FvWNsfLleelinfRshLdneekqqlnverFllpvIhGfikqaslyvngk F+WN+ L+ +l+ ++ +n++++ll++++G ++++++y+ +k KIAA0910 194 FFWNQSLHLHLK----------HYGVNCDDWLLRLMCGGVEIRTIYAAHK 233 tisltLISRRStkRAGTRFlkRGvnddGhVANFVETEQIVydsdskseka +++++LISR+S++RAGTRF++RG+nddGhVANFVETEQ+Vy +ds+s KIAA0910 234 QAKACLISRLSCERAGTRFNVRGTNDDGHVANFVETEQVVYLDDSVS--- 280 rysSFVQvRGSIPLFWeQdvegsnLsyKPlivlrsveatapafdrHFddl SF+Q+RGS+PLFWeQ+ g++++++++++ r++ea+apafdrHF++l KIAA0910 281 ---SFIQIRGSVPLFWEQP--GLQVGSHRVRMSRGFEANAPAFDRHFRTL 325 kqrYGnpivIvNLiktkkekEkplsklyeeflkaseylnsflpeeekiry k++YG +++IvNL+++ ke+E++lsk+++++lkase++++ i++ KIAA0910 326 KNLYG-KQIIVNLLGS-KEGEHMLSKAFQSHLKASEHAAD-------IQM 366 tsFDFHkeckqmnmswdrl<-* ++FD+H+++k+ ++++l KIAA0910 367 VNFDYHQMVKGG--KAEKL 383 PF02383.9.ls: domain 1 of 1, from 95 to 383: score 518.2, E = 8.3e-153 *->iyGllGlIkLkggdvmLyYLivITgkskVGqigpghaIYkitdvdfi +yGllG+++L++gd mL+YL+++Tg+++VG+i+ + +++++t ++fi KIAA0910 95 AYGLLGVLRLNLGDTMLHYLVLVTGCMSVGKIQ-ESEVFRVTSTEFI 140 slnndsvdetdiekkDEarylkihPdgisTdtqeklpkhPcslLkkvLst sl+ ds de+ ++ +++kvL++ KIAA0910 141 SLRIDSSDED---------RIS--------------------EVRKVLNS 161 gtFYFSytyDltntLQrnskvlraplenlessvdradesifdiITdyner g+FYF+++ + + ++ ++ ++++ ++++++++ KIAA0910 162 GNFYFAWSASGISLDLSLN-----AHRSMQEQTTDNR------------- 193 FvWNsfLleelinfRshLdneekqqlnverFllpvIhGfikqaslyvngk F+WN+ L+ +l+ ++ +n++++ll++++G ++++++y+ +k KIAA0910 194 FFWNQSLHLHLK----------HYGVNCDDWLLRLMCGGVEIRTIYAAHK 233 tisltLISRRStkRAGTRFlkRGvnddGhVANFVETEQIVydsdskseka +++++LISR+S++RAGTRF++RG+nddGhVANFVETEQ+Vy +ds+s KIAA0910 234 QAKACLISRLSCERAGTRFNVRGTNDDGHVANFVETEQVVYLDDSVS--- 280 rysSFVQvRGSIPLFWeQdvegsnLsyKPlivlrsveatapafdrHFddl SF+Q+RGS+PLFWeQ+ g++++++++++ r++ea+apafdrHF++l KIAA0910 281 ---SFIQIRGSVPLFWEQP--GLQVGSHRVRMSRGFEANAPAFDRHFRTL 325 kqrYGnpivIvNLiktkkekEkplsklyeeflkaseylnsflpeeekiry k++YG +++IvNL+++ ke+E++lsk+++++lkase++++ i++ KIAA0910 326 KNLYG-KQIIVNLLGS-KEGEHMLSKAFQSHLKASEHAAD-------IQM 366 tsFDFHkeckqmnmswdrl<-* ++FD+H+++k+ ++++l KIAA0910 367 VNFDYHQMVKGG--KAEKL 383 PF03372.13.ls: domain 1 of 1, from 571 to 902: score 160.8, E = 3.2e-45 *->lkiltwNvnglra.l.s......llellkedpDvicLQEvklsp.s. ++++twNvng ++ + ++++l ++l p + ++QE +++ +++ KIAA0910 571 VCVGTWNVNGGKQfRsIafknqtLTDWLLDAPKLAGIQEFQDKRsKp 617 ll.l.lg.gyv....................................... + g + + ++ + ++++++ +++ +++++ + KIAA0910 618 TDiFaIGfEEMvelnagnivsasttnqklwavelqktisrdnkyvllase 667 ...........................ytgfgg.gggkgGvailsklplv + + ++++ + ++ ++ +tg+gg +g+kg+vai++ ++ KIAA0910 668 qlvgvclfvfirpqhapfirdvavdtvKTGMGGaTGNKGAVAIRMLFH-- 715 svigidlirvilasgt.fvvvntHlpagg.rldeRlaqyaelldflsf.. t++++v++H++ag++ + eR++++ e++++lsf+ KIAA0910 716 --------------TTsLCFVCSHFAAGQsQVKERNEDFIEIARKLSFpm 751 .....ksdpvilcGDfNarpdeids.llk.igkstl.............. ++ ++d+v++cGDfN+r+d ++ ++ + i+ +++++ +++ ++++ KIAA0910 752 grmlfSHDYVFWCGDFNYRIDLPNEeVKElIRQQNWdsliagdqlinqkn 801 .........elpitfppTywsyrgt.....sekkntgsrlDrilvsg.ll ++ ++ e++ tf+pTy+++ +++ ++sek++t++++Dr+l++++ KIAA0910 802 agqvfrgflEGKVTFAPTYKYDLFSddydtSEKCRTPAWTDRVLWRRrKW 851 .rv.il.ille...........................vlgSDHrPVlat + ++++ l++ + + +++++ + ++++ + ++ +++ SDHrPV+a KIAA0910 852 pFDrSAeDLDLlnasfqdeskilytwtpgtllhygraeLKTSDHRPVVAL 901 l<-* + KIAA0910 902 I 902 PF03372.13.fs: domain 1 of 1, from 571 to 902: score 158.9, E = 1.2e-44 *->lkiltwNvnglra.l.s......llellkedpDvicLQEvklsp.s. ++++twNvng ++ + ++++l ++l p + ++QE +++ +++ KIAA0910 571 VCVGTWNVNGGKQfRsIafknqtLTDWLLDAPKLAGIQEFQDKRsKp 617 ll.l.lg.gyv....................................... + g + + ++ + ++++++ +++ +++++ + KIAA0910 618 TDiFaIGfEEMvelnagnivsasttnqklwavelqktisrdnkyvllase 667 ...........................ytgfgg.gggkgGvailsklplv + + ++++ + ++ ++ +tg+gg +g+kg+vai++ ++ KIAA0910 668 qlvgvclfvfirpqhapfirdvavdtvKTGMGGaTGNKGAVAIRMLFH-- 715 svigidlirvilasgt.fvvvntHlpagg.rldeRlaqyaelldflsf.. t++++v++H++ag++ + eR++++ e++++lsf+ KIAA0910 716 --------------TTsLCFVCSHFAAGQsQVKERNEDFIEIARKLSFpm 751 .....ksdpvilcGDfNarpdeids.llk.igkstl.............. ++ ++d+v++cGDfN+r+d ++ ++ + i+ +++++ +++ ++++ KIAA0910 752 grmlfSHDYVFWCGDFNYRIDLPNEeVKElIRQQNWdsliagdqlinqkn 801 .........elpitfppTywsyrgt.....sekkntgsrlDrilvsg.ll ++ ++ e++ tf+pTy+++ +++ ++sek++t++++Dr+l++++ KIAA0910 802 agqvfrgflEGKVTFAPTYKYDLFSddydtSEKCRTPAWTDRVLWRRrKW 851 .rv.il.ille...........................vlgSDHrPVlat + ++++ l++ + + +++++ + ++++ + ++ +++ SDHrPV+a KIAA0910 852 pFDrSAeDLDLlnasfqdeskilytwtpgtllhygraeLKTSDHRPVVAL 901 l<-* + KIAA0910 902 I 902 PF08952.1.fs: domain 1 of 1, from 903 to 1045: score 287.9, E = 1e-84 *->DVEilEVDpeaRqtVfedVIadqGPPDgTiVVslcSsspAGtDsGDd D++i+EV++e+Rq+++++VIa+qGPPDgT++Vs++Ss p KIAA0910 903 DIDIFEVEAEERQNIYKEVIAVQGPPDGTVLVSIKSSLP-------- 941 eEkniFdealideLlqkLteyGAeVtLVRFveddMWVTFrdGeSALaaLs E+n+Fd+alideLlq+++++G eV+L+RFved+MWVTF++G+SAL++Ls KIAA0910 942 -ENNFFDDALIDELLQQFASFG-EVILIRFVEDKMWVTFLEGSSALNVLS 989 ldGlkVlGrqLkirLKSpDWikaLeeEisleArdtqlnsvplsanStlLe l+G+++l r+++i LKSpDWik LeeE+sle ++ +p+s++StlL+ KIAA0910 990 LNGKELLNRTITIALKSPDWIKNLEEEMSLE--KI-SIALPSSTSSTLLG 1036 edadltvaey<-* eda+++ a++ KIAA0910 1037 EDAEVA-ADF 1045 PF08952.1.ls: domain 1 of 1, from 903 to 1045: score 289.7, E = 5.1e-84 *->DVEilEVDpeaRqtVfedVIadqGPPDgTiVVslcSsspAGtDsGDd D++i+EV++e+Rq+++++VIa+qGPPDgT++Vs++Ss p KIAA0910 903 DIDIFEVEAEERQNIYKEVIAVQGPPDGTVLVSIKSSLP-------- 941 eEkniFdealideLlqkLteyGAeVtLVRFveddMWVTFrdGeSALaaLs E+n+Fd+alideLlq+++++G eV+L+RFved+MWVTF++G+SAL++Ls KIAA0910 942 -ENNFFDDALIDELLQQFASFG-EVILIRFVEDKMWVTFLEGSSALNVLS 989 ldGlkVlGrqLkirLKSpDWikaLeeEisleArdtqlnsvplsanStlLe l+G+++l r+++i LKSpDWik LeeE+sle ++ +p+s++StlL+ KIAA0910 990 LNGKELLNRTITIALKSPDWIKNLEEEMSLE--KI-SIALPSSTSSTLLG 1036 edadltvaey<-* eda+++ a++ KIAA0910 1037 EDAEVA-ADF 1045 //