hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16200892/chunk_1/iprscan-20080502-16200892.nocrc
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Query sequence: KIAA0902
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00233                                                  77.0    2.3e-18   1
SM00454                                                  75.9    4.8e-18   1
SM00228                                                  50.9    1.7e-10   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00454     1/1      25    93 ..     1    67 []    75.9  4.8e-18
SM00228     1/1     242   314 ..     1    80 []    50.9  1.7e-10
SM00233     1/1     588   688 ..     1    82 []    77.0  2.3e-18

Alignments of top-scoring domains:
SM00454: domain 1 of 1, from 25 to 93: score 75.9, E = 4.8e-18
                   *->vs.wspesVaeWLesigleq..YadnFrkngidgeelllltseedLk
                      vs+wsp++V +W ++++ + ++Y++nF++++i+g++ll+ t ++ L+
    KIAA0902    25    VSkWSPSQVVDWMKGLDDCLqqYIKNFEREKISGDQLLRIT-HQELE 70   

                   elGitllGhRkkIlsaiqklkeq<-*
                   +lG++++Gh+  Il a+  l +    
    KIAA0902    71 DLGVSRIGHQELILEAVDLLCAL    93   

SM00228: domain 1 of 1, from 242 to 314: score 50.9, E = 1.7e-10
                   *->gglGfsivg....gifvssvvpGspAakaGrkslglLkvGDvIleVN
                      +glG  i+++ ++ +++++  ++spA+++ +     +++GD++++VN
    KIAA0902   242    EGLGMYIKStydgLHVITGTTENSPADRCKK-----IHAGDEVIQVN 283  

                   GetsvegltheeavdllkkaggggvGekvtLtvlRgg<-*
                     + v g+     v++l++ +       v Lt+++++   
    KIAA0902   284 H-QTVVGWQLKNLVNALREDPS-----GVILTLKKRP    314  

SM00233: domain 1 of 1, from 588 to 688: score 77.0, E = 2.3e-18
                   *->vikeGwLlkks......k.swkkryfvLfngvLlyyksk...kpkgs
                        +eGwL kk++ ++  +++wkk++fvL++ +L++y +++++k  g+
    KIAA0902   588    GDCEGWLWKKKdaksyfSqKWKKYWFVLKDASLYWYINEedeKAEGF 634  

                   ipLsgcsvre.p......cFeivt.dr.tlllqAeseeereeWvealqsa
                   i+L + ++++  + +++ +F+ ++++ ++++++Ae  +++++W++ ++++
    KIAA0902   635 ISLPEFKIDRaSecrkkyAFKACHpKIkSFYFAAEHLDDMNRWLNRINML 684  

                   iaka<-*
                   +a +   
    KIAA0902   685 TAGY    688  

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