# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk09606s1.fasta.huge -Q ../query/KIAA0900.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0900, 503 aa vs ./tmplib.23663 library 1987002 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 16.1217+/-0.0123; mu= -39.5533+/- 0.826 mean_var=811.8886+/-193.940, 0's: 0 Z-trim: 12 B-trim: 5 in 1/39 Lambda= 0.045012 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA0269 ( 567 res) ha06751 ( 567) 1182 91.6 1.5e-19 >>KIAA0269 ( 567 res) ha06751 (567 aa) initn: 1494 init1: 915 opt: 1182 Z-score: 442.8 bits: 91.6 E(): 1.5e-19 Smith-Waterman score: 1566; 50.000% identity (64.643% similar) in 560 aa overlap (2-501:9-565) 10 20 30 40 50 KIAA09 TMPLVKRNIEPRHLCRGALPEGITSELECVTNSTLAAIIRQLSSLSKHAEDIF ::::::::.:::::. :::.:: .::::::: .:: ::::::::::.::::: KIAA02 TGTKVNLKMPLVKRNIDPRHLCHTALPRGIKNELECVTNISLANIIRQLSSLSKYAEDIF 10 20 30 40 50 60 60 70 80 90 100 110 KIAA09 GELFNEANNFYIRANSLQDRIDRLAVKVTQLDSTVEEVSLQDINMKKAFKSSTVQDQQVV :::::::..: .:.::::.:.:::.:.::::: ::.:::::.:.:::.:::.::::. KIAA02 GELFNEAHSFSFRVNSLQERVDRLSVSVTQLDPKEEELSLQDITMRKAFRSSTIQDQQLF 70 80 90 100 110 120 120 130 140 150 160 170 KIAA09 SKNSIPNPVADIYNQSDKPPPLNILTPYRDDKKDGLKFYTDPSYFFDLWKEKMLQDTEDK .....: :. . :. ..::::::::::::: :.::::::.::::::::::::::::::: KIAA02 DRKTLPIPLQETYDVCEQPPPLNILTPYRDDGKEGLKFYTNPSYFFDLWKEKMLQDTEDK 130 140 150 160 170 180 180 190 200 210 220 KIAA09 RKEKRRQKEQKRIDGTTREVKKVRKARNRRQEWNMMAYDKELRPD--NRLSQS--VYHGA :::::.:: :: .: . : : ..::.::. .: :: : : : . : .: KIAA02 RKEKRKQK-QKNLDRPHEPEKVPRAPHDRRREWQKLAQGPELAEDDANLLHKHIEVANGP 190 200 210 220 230 230 240 250 260 270 KIAA09 SSEGSLSPDTRSHASDVTDYSYPATPNHSL---------------H-PQPVTPSYAAGDV .:. :.: : . :: : : .. : : : : ..:::. KIAA02 ASHFETRPQTYVDHMDGS-YSLSALPFSQMSELLTRAEERVLVRPHEPPPPPPMHGAGDA 240 250 260 270 280 290 280 290 300 310 320 KIAA09 PPHGPASQAAEH--EYRPPS-ASARHMALNRPQQPPPPPP-PQAPEGSQASAPMA----P : ..: : :: : :..: .. : :::::: :.: :. : :. : KIAA02 KPIPTCISSATGLIENRPQSPATGRTPVFVSPTPPPPPPPLPSALSTSSLRASMTSTPPP 300 310 320 330 340 350 330 340 350 360 370 380 KIAA09 ADYGMLPAQIIEYYNPSGPPPPPP----PPVIPSAQTAFVSPLQMPMQPPFPASASSTHA : :. :::: : : :. : .. :: .: .:: .: .. KIAA02 PVPPPPPPPATALQAPAVPPPPAPLQIAPGVLHPAPPPIAPPLVQP-SPPVARAAPVCET 360 370 380 390 400 410 390 400 410 KIAA09 APPHPPSTGLLVTAPPPPGPPP-PPPG--------------PPG---------PGSSLSS .: :: : . :::: ::: :::: ::. :: . KIAA02 VPVHPLPQGEVQGLPPPPPPPPLPPPGIRPSSPVTVTALAHPPSGLHPTPSTAPGPHVPL 420 430 440 450 460 470 420 430 440 450 460 470 KIAA09 SPMHGP----PVAEAKRQEPAQPPISDARSDLLAAIRMGIQLKKVQEQREQEAKREPVGN : : :..: ::. . : :::::: :: ::: ::::.::.::::::::.: . : KIAA02 MPPSPPSQVIPASEPKRHPSTLPVISDARSVLLEAIRKGIQLRKVEEQREQEAKHERIEN 480 490 500 510 520 530 480 490 500 KIAA09 DVATILSRRIAVEYSDSDDDSEFDENDWSD :::::::::::::::::.::::::: :: KIAA02 DVATILSRRIAVEYSDSEDDSEFDEVDWLE 540 550 560 503 residues in 1 query sequences 1987002 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:20:41 2008 done: Thu Dec 18 15:20:41 2008 Total Scan time: 0.450 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]