hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-16114194/chunk_1/iprscan-20080502-16114194.nocrc
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Query sequence: KIAA0897
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00454                                                 125.1    7.6e-33   3

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00454    1/3      60   129 ..     1    67 []    47.4  1.9e-09
SM00454    2/3     175   242 ..     1    67 []    36.9  2.8e-06
SM00454    3/3     263   335 ..     1    67 []    40.9  1.7e-07

Alignments of top-scoring domains:
SM00454: domain 1 of 3, from 60 to 129: score 47.4, E = 1.9e-09
                   *->vs.wspesVaeWLesigleq..YadnFrkngidgeelllltseedLk
                      + +w+ ++V  WLe        Y+ + r+n  +g+++ +l++ e   
    KIAA0897    60    FAqWDGPTVVSWLELWVGMPawYVAACRANVKSGAIMSALSDTEIQR 106  

                   elGitllGhRkkIlsaiqklkeq<-*
                   e+Gi+++ hR+k+  aiq++ +    
    KIAA0897   107 EIGISNALHRLKLRLAIQEMVSL    129  

SM00454: domain 2 of 3, from 175 to 242: score 36.9, E = 2.8e-06
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeelllltseedLkel
                       + +++    eWL s+gl+qY++ F+++ +d ++l +lt  ++  +l
    KIAA0897   175    GDmNHEWIGNEWLPSLGLPQYRSYFMECLVDARMLDHLTKKDLRVHL 221  

                   GitllGhRkkIlsaiqklkeq<-*
                   ++ +  hR  ++++i +lk     
    KIAA0897   222 KMVDSFHRTSLQYGIMCLKRL    242  

SM00454: domain 3 of 3, from 263 to 335: score 40.9, E = 1.7e-07
                   *->vs.wspesVaeWLesigleqYadnFrkngidgeellllt.....see
                      v  w++++V  W +sigl +Ya n+ + g++g++l+l ++ ++++++
    KIAA0897   263    VLvWTNDQVVHWVQSIGLRDYAGNLHESGVHGALLALDEnfdhnTLA 309  

                   dLkelGitllGhRkkIlsaiqklkeq<-*
                   +++++  +++++R+   ++++ l++    
    KIAA0897   310 LILQIPTQNTQARQVMEREFNNLLAL    335  

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