hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-16005221/chunk_1/iprscan-20080502-16005221.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0891 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF08959.1.fs Domain of unknown function (DUF1872) 883.7 4.4e-267 1 PF08959.1.ls Domain of unknown function (DUF1872) 885.6 2.1e-263 1 PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 371.8 3.4e-119 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 373.6 2.9e-109 1 PF01753.9.fs MYND finger 34.6 1.7e-10 1 PF01753.9.ls MYND finger 36.5 8.3e-08 1 PF04969.6.fs CS domain 28.4 9.3e-08 2 PF04969.6.ls CS domain 22.5 0.00013 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04969.6.fs 1/2 169 244 .. 1 83 [] 20.6 1.8e-05 PF04969.6.ls 1/1 169 244 .. 1 83 [] 22.5 0.00013 PF08959.1.ls 1/1 248 546 .. 1 301 [] 885.6 2.1e-263 PF08959.1.fs 1/1 248 546 .. 1 301 [] 883.7 4.4e-267 PF00443.19.fs 1/1 547 1264 .. 1 318 [] 371.8 3.4e-119 PF00443.19.ls 1/1 547 1264 .. 1 318 [] 373.6 2.9e-109 PF01753.9.ls 1/1 844 886 .. 1 43 [] 36.5 8.3e-08 PF01753.9.fs 1/1 844 886 .. 1 43 [] 34.6 1.7e-10 Alignments of top-scoring domains: PF04969.6.fs: domain 1 of 2, from 169 to 244: score 20.6, E = 1.8e-05 *->prydWyQtldeVtitiplkgvfpikkkdvkVeikpkslkvsikgpgg dW Q+ +eV++++ + + p+ +dv+ ++++ v + gg KIAA0891 169 LLLDWRQSAEEVIVKLRVGVG-PLQLEDVDAAFTDTDCVVRF--AGG 212 dkpylldgepLfgpIdpeeSswkiedtkkveItLkK<-* + g ++++I+ ++ ++ ++ +++tL K KIAA0891 213 ---QQWGGV-FYAEIKSSCAKVQTRKGSLLHLTLPK 244 PF04969.6.ls: domain 1 of 1, from 169 to 244: score 22.5, E = 0.00013 *->prydWyQtldeVtitiplkgvfpikkkdvkVeikpkslkvsikgpgg dW Q+ +eV++++ + + p+ +dv+ ++++ v + gg KIAA0891 169 LLLDWRQSAEEVIVKLRVGVG-PLQLEDVDAAFTDTDCVVRF--AGG 212 dkpylldgepLfgpIdpeeSswkiedtkkveItLkK<-* + g ++++I+ ++ ++ ++ +++tL K KIAA0891 213 ---QQWGGV-FYAEIKSSCAKVQTRKGSLLHLTLPK 244 PF08959.1.ls: domain 1 of 1, from 248 to 546: score 885.6, E = 2.1e-263 *->fLsdsallvEAeEkLCiPPlnsqtsLLssEksLAlLavEKavsPrnD +L++++llvEA+E+LCiPPlnsqt+LL+sE++LA+La+EKav+P+nD KIAA0891 248 MLTWPSLLVEADEQLCIPPLNSQTCLLGSEENLAPLAGEKAVPPGND 294 PvaPvmvrdRdpePekeDqvKEEmAlaADaaaLveEPEsmvnLAFvKnDs Pv+P+mvr+R+ P+k+D++KEEmA+aADaa+Lv+EPEsmvnLAFvKnDs KIAA0891 295 PVSPAMVRSRN--PGKDDCAKEEMAVAADAATLVDEPESMVNLAFVKNDS 342 YEKGPDsvvvHvYvKEirRDssRvLFREqDFtLiFqtRDGnFLRLHPGCG YEKGPDsvvvHvYvKEi+RD+sRvLFREqDFtLiFqtRDGnFLRLHPGCG KIAA0891 343 YEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCG 392 PHtiFRWqvKLRnLiEPEqCtFCFtAsRiDiCLRKRqsqRWGGLEAPAaR PHt+FRWqvKLRnLiEPEqCtFCFtAsRiDiCLRKRqsqRWGGLEAPAaR KIAA0891 393 PHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPAAR 442 vGGAKvAvPtGPtPLDstPPGGaPHPLtGqEEARAvEKeKsKARsEDsGL vGGAKvAvPtGPtPLDstPPGGaPHPLtGqEEARAvEK+KsKARsED+GL KIAA0891 443 VGGAKVAVPTGPTPLDSTPPGGAPHPLTGQEEARAVEKDKSKARSEDTGL 492 DsvvaRtPlEHvaPKPetHLAsPKPtCmvPPmPHsPvsGDsvEEeEEEEK Dsv++RtP+EHv+PKPetHLAsPKPtCmvPPmPHsPvsGDsvEEeEEEEK KIAA0891 493 DSVATRTPMEHVTPKPETHLASPKPTCMVPPMPHSPVSGDSVEEEEEEEK 542 KvCL<-* KvCL KIAA0891 543 KVCL 546 PF08959.1.fs: domain 1 of 1, from 248 to 546: score 883.7, E = 4.4e-267 *->fLsdsallvEAeEkLCiPPlnsqtsLLssEksLAlLavEKavsPrnD +L++++llvEA+E+LCiPPlnsqt+LL+sE++LA+La+EKav+P+nD KIAA0891 248 MLTWPSLLVEADEQLCIPPLNSQTCLLGSEENLAPLAGEKAVPPGND 294 PvaPvmvrdRdpePekeDqvKEEmAlaADaaaLveEPEsmvnLAFvKnDs Pv+P+mvr+R+ P+k+D++KEEmA+aADaa+Lv+EPEsmvnLAFvKnDs KIAA0891 295 PVSPAMVRSRN--PGKDDCAKEEMAVAADAATLVDEPESMVNLAFVKNDS 342 YEKGPDsvvvHvYvKEirRDssRvLFREqDFtLiFqtRDGnFLRLHPGCG YEKGPDsvvvHvYvKEi+RD+sRvLFREqDFtLiFqtRDGnFLRLHPGCG KIAA0891 343 YEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCG 392 PHtiFRWqvKLRnLiEPEqCtFCFtAsRiDiCLRKRqsqRWGGLEAPAaR PHt+FRWqvKLRnLiEPEqCtFCFtAsRiDiCLRKRqsqRWGGLEAPAaR KIAA0891 393 PHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEAPAAR 442 vGGAKvAvPtGPtPLDstPPGGaPHPLtGqEEARAvEKeKsKARsEDsGL vGGAKvAvPtGPtPLDstPPGGaPHPLtGqEEARAvEK+KsKARsED+GL KIAA0891 443 VGGAKVAVPTGPTPLDSTPPGGAPHPLTGQEEARAVEKDKSKARSEDTGL 492 DsvvaRtPlEHvaPKPetHLAsPKPtCmvPPmPHsPvsGDsvEEeEEEEK Dsv++RtP+EHv+PKPetHLAsPKPtCmvPPmPHsPvsGDsvEEeEEEEK KIAA0891 493 DSVATRTPMEHVTPKPETHLASPKPTCMVPPMPHSPVSGDSVEEEEEEEK 542 KvCL<-* KvCL KIAA0891 543 KVCL 546 PF00443.19.fs: domain 1 of 1, from 547 to 1264: score 371.8, E = 3.4e-119 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl pg+tGLvNlGNTC+mNSv+Q+L+++++lrd+f s e ein npl KIAA0891 547 PGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPL 593 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy g g+l+ +a L++al++g++ ps+lk +++++++++f gy KIAA0891 594 GTGGRLAIGFAVLLRALWKGtHHAFQPSKLK------AIVASKASQFTGY 637 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd.kaa.eawknh Q+DA+EF++fLLdgLhedlnr+ kpyte+ +sd+rpd+ +a+eaw +h KIAA0891 638 AQHDAQEFMAFLLDGLHEDLNRIQNKPYTETVDSDGRPDeVVAeEAWQRH 687 RF xxxxxxxxxxxxxxxxxx ltrnesiitdlFqGqlks................................ + rn+s+i+dlFqGq+ks+ ++ + + + + ++ + + +++++ + KIAA0891 688 KMRNDSFIVDLFQGQYKSklvcpvcakvsitfdpflylpvplpqkqkvlp 737 RF .................................................. +++++++ + + ++++++ ++ ++ +++ + ++++ + + KIAA0891 738 vfyfarephskpikflvsvskenstasevldslsqsvhvkpenlrlaevi 787 RF .................................................. +++ ++ ++++ ++ +++++ + + +++ +++ + +++++ + KIAA0891 788 knrfhrvflpshsldtvspsdtllcfellsselakervvvlevqqrpqvp 837 RF .................................................. + + +++ +++++++++++ ++++++ + + +++ +++++ +++++ ++ KIAA0891 838 svpiskcaacqrkqqsedeklkrctrcyrvgycnqlcqkthwpdhkglcr 887 RF .................................................. +++ + + + + ++ + + + ++ + + + +++ ++++ ++ KIAA0891 888 penigypflvsvpasrltyarlaqllegyarysvsvfqppfqpgrmales 937 RF .................................................. +++++++ ++++ + +++++++ ++++ + ++ +++++ ++ ++ KIAA0891 938 qspgcttllstgsleagdserdpiqppelqlvtpmaegdtglprvwaapd 987 RF .................................................. +++ +++++ +++ +++ + ++ + +++ ++++ ++ +++++ + KIAA0891 988 rgpvpstsgissemlasgpievgslpagervsrpeaavpgyqhpseamna 1037 RF .................................................. ++++ + ++++++++ +++++++ + +++++ +++++ ++ KIAA0891 1038 htpqffiykidssnreqrledkgdtplelgddcslalvwrnnerlqefvl 1087 RF .................................................. +++ ++ +++++ ++ + ++ + +++ + ++++ +++ ++++ KIAA0891 1088 vaskelecaedpgsageaaraghftldqclnlftrpevlapeeawycpqc 1137 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ........klkikrLPpvLiihLKRFsyngetglnkKiddkVefPleLdl +++++ +++l ++rLP vLi++LKRFs+ + ++ Ki+d VefP ++++ KIAA0891 1138 kqhreaskQLLLWRLPNVLIVQLKRFSFRSF-IWRDKINDLVEFPVRNLD 1186 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ssycnaelkekevlrkdekieklkeerqrdedgnneeepeeeedneegen s ++ + k e+ KIAA0891 1187 LSKFCIGQK---------------------------------------EE 1197 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxx pptkYeLyaVvvHsGsslssGHYiayikk......kkengkWykfDDekV + Y+LyaV++H+G ++ +GHY+a+++ ++++++ ++ +W++fDD++V KIAA0891 1198 QLPSYDLYAVINHYG-GMIGGHYTACARLpndrssQRSDVGWRLFDDSTV 1246 RF xxxxxxxxxxxxxxxxxxxx sevteeevlersssAYiLFY<-* + v+e++v +++ AY+LFY KIAA0891 1247 TTVDESQV--VTRYAYVLFY 1264 PF00443.19.ls: domain 1 of 1, from 547 to 1264: score 373.6, E = 2.9e-109 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl pg+tGLvNlGNTC+mNSv+Q+L+++++lrd+f s e ein npl KIAA0891 547 PGFTGLVNLGNTCFMNSVIQSLSNTRELRDFFHDRSFEAEINYNNPL 593 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy g g+l+ +a L++al++g++ ps+lk +++++++++f gy KIAA0891 594 GTGGRLAIGFAVLLRALWKGtHHAFQPSKLK------AIVASKASQFTGY 637 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxx xxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpd.kaa.eawknh Q+DA+EF++fLLdgLhedlnr+ kpyte+ +sd+rpd+ +a+eaw +h KIAA0891 638 AQHDAQEFMAFLLDGLHEDLNRIQNKPYTETVDSDGRPDeVVAeEAWQRH 687 RF xxxxxxxxxxxxxxxxxx ltrnesiitdlFqGqlks................................ + rn+s+i+dlFqGq+ks+ ++ + + + + ++ + + +++++ + KIAA0891 688 KMRNDSFIVDLFQGQYKSklvcpvcakvsitfdpflylpvplpqkqkvlp 737 RF .................................................. +++++++ + + ++++++ ++ ++ +++ + ++++ + + KIAA0891 738 vfyfarephskpikflvsvskenstasevldslsqsvhvkpenlrlaevi 787 RF .................................................. +++ ++ ++++ ++ +++++ + + +++ +++ + +++++ + KIAA0891 788 knrfhrvflpshsldtvspsdtllcfellsselakervvvlevqqrpqvp 837 RF .................................................. + + +++ +++++++++++ ++++++ + + +++ +++++ +++++ ++ KIAA0891 838 svpiskcaacqrkqqsedeklkrctrcyrvgycnqlcqkthwpdhkglcr 887 RF .................................................. +++ + + + + ++ + + + ++ + + + +++ ++++ ++ KIAA0891 888 penigypflvsvpasrltyarlaqllegyarysvsvfqppfqpgrmales 937 RF .................................................. +++++++ ++++ + +++++++ ++++ + ++ +++++ ++ ++ KIAA0891 938 qspgcttllstgsleagdserdpiqppelqlvtpmaegdtglprvwaapd 987 RF .................................................. +++ +++++ +++ +++ + ++ + +++ ++++ ++ +++++ + KIAA0891 988 rgpvpstsgissemlasgpievgslpagervsrpeaavpgyqhpseamna 1037 RF .................................................. ++++ + ++++++++ +++++++ + +++++ +++++ ++ KIAA0891 1038 htpqffiykidssnreqrledkgdtplelgddcslalvwrnnerlqefvl 1087 RF .................................................. +++ ++ +++++ ++ + ++ + +++ + ++++ +++ ++++ KIAA0891 1088 vaskelecaedpgsageaaraghftldqclnlftrpevlapeeawycpqc 1137 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ........klkikrLPpvLiihLKRFsyngetglnkKiddkVefPleLdl +++++ +++l ++rLP vLi++LKRFs+ + ++ Ki+d VefP ++++ KIAA0891 1138 kqhreaskQLLLWRLPNVLIVQLKRFSFRSF-IWRDKINDLVEFPVRNLD 1186 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ssycnaelkekevlrkdekieklkeerqrdedgnneeepeeeedneegen s ++ + k e+ KIAA0891 1187 LSKFCIGQK---------------------------------------EE 1197 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxx pptkYeLyaVvvHsGsslssGHYiayikk......kkengkWykfDDekV + Y+LyaV++H+G ++ +GHY+a+++ ++++++ ++ +W++fDD++V KIAA0891 1198 QLPSYDLYAVINHYG-GMIGGHYTACARLpndrssQRSDVGWRLFDDSTV 1246 RF xxxxxxxxxxxxxxxxxxxx sevteeevlersssAYiLFY<-* + v+e++v +++ AY+LFY KIAA0891 1247 TTVDESQV--VTRYAYVLFY 1264 PF01753.9.ls: domain 1 of 1, from 844 to 886: score 36.5, E = 8.3e-08 *->CanCgreatks.rqLkkCsrCknarYCSkeCQrkdWllgHkreC<-* Ca C r++ + +++Lk+C+rC+++ YC + CQ+++W+ +Hk C KIAA0891 844 CAACQRKQQSEdEKLKRCTRCYRVGYCNQLCQKTHWP-DHKGLC 886 PF01753.9.fs: domain 1 of 1, from 844 to 886: score 34.6, E = 1.7e-10 *->CanCgreatks.rqLkkCsrCknarYCSkeCQrkdWllgHkreC<-* Ca C r++ + +++Lk+C+rC+++ YC + CQ+++W+ +Hk C KIAA0891 844 CAACQRKQQSEdEKLKRCTRCYRVGYCNQLCQKTHWP-DHKGLC 886 //