hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15453487/chunk_1/iprscan-20080502-15453487.nocrc
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Query sequence: KIAA0882
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00566.9.ls TBC domain                                     236.6    5.1e-68   1
PF00566.9.fs TBC domain                                     234.7    1.9e-67   1
PF02893.10.ls GRAM domain                                    193.4      5e-55   2
PF02893.10.fs GRAM domain                                    189.8    6.2e-54   2
PF00036.22.fs EF hand                                         20.6    0.00014   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02893.10.fs   1/2     171   238 ..     1    82 []    96.9  2.4e-26
PF02893.10.ls   1/2     171   238 ..     1    82 []    98.7  1.6e-26
PF02893.10.ls   2/2     318   386 ..     1    82 []    94.7  2.6e-25
PF02893.10.fs   2/2     318   386 ..     1    82 []    92.9  3.2e-25
PF00566.9.fs   1/1     537   749 ..     1   219 []   234.7  1.9e-67
PF00566.9.ls   1/1     537   749 ..     1   219 []   236.6  5.1e-68
PF00036.22.fs   2/2     915   943 ..     1    29 []    18.8  0.00044

Alignments of top-scoring domains:
PF02893.10.fs: domain 1 of 2, from 171 to 238: score 96.9, E = 2.4e-26
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                       kf+  F+  +p+eEkL+++     ysC ++++  k+p+qG++Yl+ 
    KIAA0882   171    VKFHRLFG--MPEEEKLVNY-----YSCSYWKG--KVPRQGWMYLSI 208  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   n+lcF+S+++g ++     klvi+++di+++ek+    
    KIAA0882   209 NHLCFYSFLMGREA-----KLVIRWVDITQLEKNA    238  

PF02893.10.ls: domain 1 of 2, from 171 to 238: score 98.7, E = 1.6e-26
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                       kf+  F+  +p+eEkL+++     ysC ++++  k+p+qG++Yl+ 
    KIAA0882   171    VKFHRLFG--MPEEEKLVNY-----YSCSYWKG--KVPRQGWMYLSI 208  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   n+lcF+S+++g ++     klvi+++di+++ek+    
    KIAA0882   209 NHLCFYSFLMGREA-----KLVIRWVDITQLEKNA    238  

PF02893.10.ls: domain 2 of 2, from 318 to 386: score 94.7, E = 2.6e-25
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                      e++r+ F+  lp++EkL+++     ++C+l++pf+k++  G++++++
    KIAA0882   318    ERYRALFR--LPKDEKLDGH-----TDCTLWTPFNKMHILGQMFVST 357  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   n++cF S k+ +l+     +l+iPl++++ vek +   
    KIAA0882   358 NYICFTS-KEENLC-----SLIIPLREVTIVEKAD    386  

PF02893.10.fs: domain 2 of 2, from 318 to 386: score 92.9, E = 3.2e-25
                   *->ekfrkiFkeilppeEkLiadckaeVysCplqrpfskipvqGrlYltn
                      e++r+ F+  lp++EkL+++     ++C+l++pf+k++  G++++++
    KIAA0882   318    ERYRALFR--LPKDEKLDGH-----TDCTLWTPFNKMHILGQMFVST 357  

                   nrlcFrSdklgdltkegvyklviPladiervekes<-*
                   n++cF S k+ +l+     +l+iPl++++ vek +   
    KIAA0882   358 NYICFTS-KEENLC-----SLIIPLREVTIVEKAD    386  

PF00566.9.fs: domain 1 of 1, from 537 to 749: score 234.7, E = 1.9e-67
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                      v  G p s+r++ W+++sgA   +   +g+Ye l+ +  +k   a +
    KIAA0882   537    VLKGIPESMRGELWLLLSGAINEKATHPGYYEDLVEKSMGKYNLATE 583  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                   +Ie+D+ R+L++  aFq +    gi  LrrvL+AY  +nP +gYcQ+MN+
    KIAA0882   584 EIERDLHRSLPEHPAFQNE---MGIAALRRVLTAYAFRNPNIGYCQAMNI 630  

                   vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv
                   v + +Ll    Ee+AF++L  L+e  +P  Yy     G + Dq v++   
    KIAA0882   631 VTSVLLLYA-KEEEAFWLLVALCERMLPD-YYNTRVVGALVDQGVFEELA 678  

                   eellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFadG
                    +  p+LY  +  +gv  + +sL wfL+L+   +P e A+ + D +F +G
    KIAA0882   679 RDYVPQLYDCMQDLGV-ISTISLSWFLTLFLSVMPFESAVVVVDCFFYEG 727  

                   ivllfrvaLAvLkilkeqiLda<-*
                   i + f+ aLAvL  + + +L +   
    KIAA0882   728 IKVIFQLALAVLDANVDKLLNC    749  

PF00566.9.ls: domain 1 of 1, from 537 to 749: score 236.6, E = 5.1e-68
                   *->vkeGvpsstrakVWavcsgAyqlrYAsageYerllrrgdekesqavd
                      v  G p s+r++ W+++sgA   +   +g+Ye l+ +  +k   a +
    KIAA0882   537    VLKGIPESMRGELWLLLSGAINEKATHPGYYEDLVEKSMGKYNLATE 583  

                   kIekDvkRtLvkesaFqsrGKGegiskLrrvLvAYswknPdvgYcQGMNV
                   +Ie+D+ R+L++  aFq +    gi  LrrvL+AY  +nP +gYcQ+MN+
    KIAA0882   584 EIERDLHRSLPEHPAFQNE---MGIAALRRVLTAYAFRNPNIGYCQAMNI 630  

                   vaApfLllykSEeqAFyfLdrLlenvvPlKYylpdldGvrlDqkvLdsfv
                   v + +Ll    Ee+AF++L  L+e  +P  Yy     G + Dq v++   
    KIAA0882   631 VTSVLLLYA-KEEEAFWLLVALCERMLPD-YYNTRVVGALVDQGVFEELA 678  

                   eellprLYeYLlskgvdlkvvsLpwfLsLyattlPleeAlrIfDiLFadG
                    +  p+LY  +  +gv  + +sL wfL+L+   +P e A+ + D +F +G
    KIAA0882   679 RDYVPQLYDCMQDLGV-ISTISLSWFLTLFLSVMPFESAVVVVDCFFYEG 727  

                   ivllfrvaLAvLkilkeqiLda<-*
                   i + f+ aLAvL  + + +L +   
    KIAA0882   728 IKVIFQLALAVLDANVDKLLNC    749  

PF00036.22.fs: domain 2 of 2, from 915 to 943: score 18.8, E = 0.00044
                   *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-*
                       + ++F+++D +gD  I+f Ef+++l++    
    KIAA0882   915    LASRLFQLLDENGDSLINFREFVSGLSAA    943  

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