hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15435171/chunk_1/iprscan-20080502-15435171.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0881 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 301.0 8.8e-86 1 SM00219 100.0 2.7e-25 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 43 295 .. 1 280 [] 100.0 2.7e-25 SM00220 1/1 43 296 .. 1 231 [] 301.0 8.8e-86 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 43 to 295: score 100.0, E = 2.7e-25 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda.......keeF + ++++G+G FG Vy ++ ++++ VA+K++ +++++++++ +++ KIAA0881 43 FSDLREIGHGSFGAVYFARDVrnsEVVAIKKMS-YSgkqsnekWQDI 88 lrEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLl ++E + + kl +HpN ++ G+ + e + ++vmEy+ +G+ KIAA0881 89 IKEVRFLQKL--RHPNTIQYRGCYLRE-------HTAWLVMEYC-LGSAS 128 dyLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenk d L +++ l+ + + + +G +YL+s+n +HRD A N+L++e++ KIAA0881 129 DLLEVHKKPLQEVEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEPG 178 vvKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEsl.. vK +DFG + + g+ WmAPE++ KIAA0881 179 LVKLGDFGSASIMAPA-------NSFV-----GTP-----YWMAPEVIla 211 .kdgkFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkG ++g + k DVWS G+++ E+ + ++P + m++ +l ++ + KIAA0881 212 mDEGQYDGKVDVWSLGITCIELAER-KPPLFN-----MNAMSALYHIAQN 255 yRlpkPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel.verl<-* + + + ++ + +C + P dRPt + l ++r+ KIAA0881 256 ESPVLQSG-------HWSEYFRNFVDSCLQKIPQDRPTSEVLlKHRF 295 SM00220: domain 1 of 1, from 43 to 296: score 301.0, E = 8.8e-86 *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril + l+++G+G+FG Vy ard++ ++vAiK+++ ++++++++ ++i+ KIAA0881 43 FSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSysgkqsnekwQDII 89 rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr +E++ L+k +HPN +++ +++ ++ +lVmEyc G + dll+ +++ KIAA0881 90 KEVRFLQKlRHPNTIQYRGCYLReHTAWLVMEYCLG---SASDLLEVHKK 136 rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK + l E e++ +++ l++L+YLHs++ iHRD+K NiLL++++ vK KIAA0881 137 P-----LQEvEIAAVTHGALQGLAYLHSHNMIHRDVKAGNILLSEpgLVK 181 laDFGlArql...ttfvGTpeYmAPEvl......gYgkpavDiWSlGcil l+DFG+A ++ + ++fvGTp++mAPEv+ ++++Y++ +vD+WSlG++ KIAA0881 182 LGDFGSASIMapaNSFVGTPYWMAPEVIlamdegQYDG-KVDVWSLGITC 230 yElltGkpPFp...qldlifkkig...........SpeakdLikklLvkd +El+ +kpP + + + +++++ ++++ ++++S+ ++++++ +L+k KIAA0881 231 IELAERKPPLFnmnAMSALYHIAQnespvlqsghwSEYFRNFVDSCLQKI 280 PekRlta.eaLedeldikaHPff<-* P++R+t + +L+ H f+ KIAA0881 281 PQDRPTSeVLLK-------HRFV 296 //