hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15270811/chunk_1/iprscan-20080502-15270811.nocrc
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Query sequence: KIAA0871
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF02759.9.fs RUN domain                                     169.1    2.6e-48   1
PF02759.9.ls RUN domain                                     170.9      3e-48   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF02759.9.fs   1/1     105   229 ..     1   174 []   169.1  2.6e-48
PF02759.9.ls   1/1     105   229 ..     1   174 []   170.9    3e-48

Alignments of top-scoring domains:
PF02759.9.fs: domain 1 of 1, from 105 to 229: score 169.1, E = 2.6e-48
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +++ ++e++l+HGLk                         a+ ++l 
    KIAA0871   105    QFFVVMEHCLKHGLK-------------------------AKKTFLG 126  

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   +       ++s+      ++p+++v +++++  +i+ ++++L+      +
    KIAA0871   127 Q-------NKSF------WGPLELVEKLVPEAAEITASVKDLPG-----L 158  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   kt+vgrgR  AW+RlaL++k+Ls+y+k L++++ell+++Y+pnAl+++  
    KIAA0871   159 KTPVGRGR--AWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMME-- 204  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    eeg  i+++lL+gL+++d ++++k+e   
    KIAA0871   205 -EEG-AIIAGLLVGLNVIDANFCMKGE    229  

PF02759.9.ls: domain 1 of 1, from 105 to 229: score 170.9, E = 3e-48
                   *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls
                      +++ ++e++l+HGLk                         a+ ++l 
    KIAA0871   105    QFFVVMEHCLKHGLK-------------------------AKKTFLG 126  

                   sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi
                   +       ++s+      ++p+++v +++++  +i+ ++++L+      +
    KIAA0871   127 Q-------NKSF------WGPLELVEKLVPEAAEITASVKDLPG-----L 158  

                   ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS
                   kt+vgrgR  AW+RlaL++k+Ls+y+k L++++ell+++Y+pnAl+++  
    KIAA0871   159 KTPVGRGR--AWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMME-- 204  

                   deegCeillslLqgLsaldFsLdlkfe<-*
                    eeg  i+++lL+gL+++d ++++k+e   
    KIAA0871   205 -EEG-AIIAGLLVGLNVIDANFCMKGE    229  

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