# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk06991.fasta.huge -Q ../query/KIAA0871.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0871, 471 aa vs ./tmplib.23663 library 1987034 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 8.1435+/-0.00768; mu= -4.3782+/- 0.515 mean_var=278.5611+/-71.430, 0's: 0 Z-trim: 8 B-trim: 0 in 0/40 Lambda= 0.076845 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1537 ( 619 res) fj02581s1 ( 619) 1294 157.1 3e-39 >>KIAA1537 ( 619 res) fj02581s1 (619 aa) initn: 1374 init1: 1246 opt: 1294 Z-score: 796.6 bits: 157.1 E(): 3e-39 Smith-Waterman score: 1610; 62.871% identity (86.139% similar) in 404 aa overlap (58-447:14-414) 30 40 50 60 70 80 KIAA08 IYLCKFRVSMDGEWLCLRELDDISLTPDPEPTHEDPNYLMANERMNLMNMAKLSIKGLIE :. .::. : :: ::.:::::::::::: KIAA15 GLEVPRRPGARTGPATKDPT---AVERANLLNMAKLSIKGLIE 10 20 30 40 90 100 110 120 130 140 KIAA08 SALNLGRTLDSDYAPLQQFFVVMEHCLKHGLKAKKTFLGQNKSFWGPLELVEKLVPEAAE :::..:::::::: ::::::::::::::::::..:.::. ::..:::::::::: ::: : KIAA15 SALSFGRTLDSDYPPLQQFFVVMEHCLKHGLKVRKSFLSYNKTIWGPLELVEKLYPEAEE 50 60 70 80 90 100 150 160 170 180 190 200 KIAA08 ITASVKDLPGLKTPVGRGRAWLRLALMQKKLSEYMKALINKKELLSEFYEPNALMMEEEG : :::.::::::::.::.::::::::::::...:.. :: ...::::::: .:::::::: KIAA15 IGASVRDLPGLKTPLGRARAWLRLALMQKKMADYLRCLIIQRDLLSEFYEYHALMMEEEG 110 120 130 140 150 160 210 220 230 240 250 260 KIAA08 AIIAGLLVGLNVIDANFCMKGEDLDSQVGVIDFSMYLKDGNSSKGTEGDGQITAILDQKN :.:.::::::::::::.:.:::::::::::::::::::. .. . : . ::.::::::: KIAA15 AVIVGLLVGLNVIDANLCVKGEDLDSQVGVIDFSMYLKNEEDIGNKERNVQIAAILDQKN 170 180 190 200 210 220 270 280 290 300 310 320 KIAA08 YVEELNRHLNATVNNLQAKVDALEKSNTKLTEELAVANNRIITLQEEMERVKEESSYIL- :::::::.::.::..:...::.:::::::: ::::.:.: :: :::: .... :.. :: KIAA15 YVEELNRQLNSTVSSLHSRVDSLEKSNTKLIEELAIAKNNIIKLQEENHQLRSENKLILM 230 240 250 260 270 280 330 340 350 360 370 KIAA08 -------------ESNRKGPKQDRTAEGQALSEARKHLKEETQLRLDVEKELEMQISMRQ :.. . :..: . . .:::..:..:.::: :::.:: .:.::.. KIAA15 KTQQHLEVTKVDVETELQTYKHSRQGLDEMYNEARRQLRDESQLRQDVENELAVQVSMKH 290 300 310 320 330 340 380 390 400 410 420 430 KIAA08 EMELAMKMLEKDVCEKQDALVSLRQQLDDLRALKHELAFKLQSSDLGVKQKSELNSRLEE :.:::::.::::. ::::.:..:::::....:.. :. :::.:. :.:.:.:. .:::: KIAA15 EIELAMKLLEKDIHEKQDTLIGLRQQLEEVKAINIEMYQKLQGSEDGLKEKNEIIARLEE 350 360 370 380 390 400 440 450 460 470 KIAA08 KTNQMAATIKQLEQSEKDLVKQAKTLNSAANKLIPKHH :::...:...:::: KIAA15 KTNKITAAMRQLEQRLQQAEKAQMEAEDEDEKYLQECLSKSDSLQKQISQKEKQLVQLET 410 420 430 440 450 460 471 residues in 1 query sequences 1987034 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:19:33 2008 done: Thu Dec 18 15:19:34 2008 Total Scan time: 0.440 Total Display time: 0.010 Function used was FASTA [version 34.26.5 April 26, 2007]