hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15114323/chunk_1/iprscan-20080502-15114323.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0862 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00369 224.2 1.2e-62 16 SM00364 84.0 1.8e-20 12 SM00365 52.9 4.3e-11 6 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00369 1/16 124 146 .. 1 24 [] 21.1 0.16 SM00364 1/12 124 143 .. 1 20 [] 8.2 52 SM00365 1/6 124 142 .. 1 22 [] 9.6 54 SM00369 2/16 147 169 .. 1 24 [] 14.5 7.1 SM00364 2/12 147 166 .. 1 20 [] 11.0 23 SM00364 3/12 170 189 .. 1 20 [] 4.7 1.5e+02 SM00365 2/6 170 191 .. 1 22 [] 9.2 60 SM00369 3/16 170 192 .. 1 24 [] 15.4 5.5 SM00365 3/6 193 218 .. 1 22 [] 20.0 0.34 SM00369 4/16 193 215 .. 1 24 [] 13.7 8.9 SM00364 4/12 216 235 .. 1 20 [] 2.1 3.4e+02 SM00369 5/16 216 237 .. 1 24 [] 6.9 60 SM00369 6/16 239 262 .. 1 24 [] 24.7 0.013 SM00364 5/12 239 258 .. 1 20 [] 5.9 1e+02 SM00365 4/6 239 270 .. 1 22 [] 4.6 2.2e+02 SM00364 6/12 262 281 .. 1 20 [] 3.4 2.2e+02 SM00364 7/12 285 304 .. 1 20 [] 8.7 45 SM00369 7/16 285 308 .. 1 24 [] 18.4 1 SM00364 8/12 308 327 .. 1 20 [] 15.9 5.2 SM00369 8/16 309 331 .. 1 24 [] 16.0 4.6 SM00369 9/16 332 355 .. 1 24 [] 4.1 1.3e+02 SM00369 10/16 356 379 .. 1 24 [] 3.8 1.4e+02 SM00369 11/16 403 425 .. 1 24 [] 5.0 1e+02 SM00369 12/16 426 448 .. 1 24 [] 19.4 0.5 SM00364 9/12 426 445 .. 1 20 [] 7.2 71 SM00364 10/12 449 468 .. 1 20 [] 4.6 1.6e+02 SM00365 5/6 449 467 .. 1 22 [] 3.6 2.9e+02 SM00369 13/16 449 471 .. 1 24 [] 19.3 0.54 SM00364 11/12 472 491 .. 1 20 [] 8.4 50 SM00369 14/16 472 494 .. 1 24 [] 19.1 0.61 SM00365 6/6 495 523 .. 1 22 [] 5.9 1.5e+02 SM00369 15/16 495 516 .. 1 24 [] 16.7 3.4 SM00364 12/12 495 514 .. 1 20 [] 3.8 2e+02 SM00369 16/16 518 542 .. 1 24 [] 6.1 74 Alignments of top-scoring domains: SM00369: domain 1 of 16, from 124 to 146: score 21.1, E = 0.16 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L+eL+L +N+L+sLP+++ ++ KIAA0862 124 LTQLTELYLYSNKLQSLPAEV-GC 146 SM00364: domain 1 of 12, from 124 to 143: score 8.2, E = 52 *->PpsLkeLnvsnNrLteLPeL<-* +L+eL+ +N+L +LP+ KIAA0862 124 LTQLTELYLYSNKLQSLPAE 143 SM00365: domain 1 of 6, from 124 to 142: score 9.6, E = 54 *->LtnLeeLdLsqNkIkkiENLde<-* Lt+L+eL+L++Nk+ + L KIAA0862 124 LTQLTELYLYSNKL---QSLPA 142 SM00369: domain 2 of 16, from 147 to 169: score 14.5, E = 7.1 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL +L Ls N LtsLP+ + ++ KIAA0862 147 LVNLMTLALSENSLTSLPDSL-DN 169 SM00364: domain 2 of 12, from 147 to 166: score 11.0, E = 23 *->PpsLkeLnvsnNrLteLPeL<-* +L +L s+N+Lt+LP+ KIAA0862 147 LVNLMTLALSENSLTSLPDS 166 SM00364: domain 3 of 12, from 170 to 189: score 4.7, E = 1.5e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L+ L+ ++N+L+e P KIAA0862 170 LKKLRMLDLRHNKLREIPSV 189 SM00365: domain 2 of 6, from 170 to 191: score 9.2, E = 60 *->LtnLeeLdLsqNkIkkiENLde<-* L++L++LdL++Nk++ i + KIAA0862 170 LKKLRMLDLRHNKLREIPSVVY 191 SM00369: domain 3 of 16, from 170 to 192: score 15.4, E = 5.5 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +Lr LdL +N+L+++P+ + KIAA0862 170 LKKLRMLDLRHNKLREIPSVV-YR 192 SM00365: domain 3 of 6, from 193 to 218: score 20.0, E = 0.34 *->LtnLeeLdLsqNkI....kkiENLde<-* L+ L++L+L++N+I++ +k i NL++ KIAA0862 193 LDSLTTLYLRFNRIttveKDIKNLSK 218 SM00369: domain 4 of 16, from 193 to 215: score 13.7, E = 8.9 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L +L++L+L +N++t++ ++ + KIAA0862 193 LDSLTTLYLRFNRITTVEKDI-KN 215 SM00364: domain 4 of 12, from 216 to 235: score 2.1, E = 3.4e+02 *->PpsLkeLnvsnNrLteLPeL<-* ++L L +++N+++ LP+ KIAA0862 216 LSKLSMLSIRENKIKQLPAE 235 SM00369: domain 5 of 16, from 216 to 237: score 6.9, E = 60 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L L+ N++++LP+++ g KIAA0862 216 LSKLSMLSIRENKIKQLPAEI--G 237 SM00369: domain 6 of 16, from 239 to 262: score 24.7, E = 0.013 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L nL +Ld +NqL++LP ++ ++ KIAA0862 239 LCNLITLDVAHNQLEHLPKEIGNC 262 SM00364: domain 5 of 12, from 239 to 258: score 5.9, E = 1e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L +L+v +N+L+ LP KIAA0862 239 LCNLITLDVAHNQLEHLPKE 258 SM00365: domain 4 of 6, from 239 to 270: score 4.6, E = 2.2e+02 *->LtnLeeLdLsqNkI..........kkiENLde<-* L nL +Ld+ +N++++ +++ ++ ++i NLd KIAA0862 239 LCNLITLDVAHNQLehlpkeigncTQITNLDL 270 SM00364: domain 6 of 12, from 262 to 281: score 3.4, E = 2.2e+02 *->PpsLkeLnvsnNrLteLPeL<-* +++ L+ ++N+L +LP+ KIAA0862 262 CTQITNLDLQHNELLDLPDT 281 SM00364: domain 7 of 12, from 285 to 304: score 8.7, E = 45 *->PpsLkeLnvsnNrLteLPeL<-* +sL +L+ ++NrL+ P KIAA0862 285 LSSLSRLGLRYNRLSAIPRS 304 SM00369: domain 7 of 16, from 285 to 308: score 18.4, E = 1 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L +L L +N+L+++P+ + + KIAA0862 285 LSSLSRLGLRYNRLSAIPRSLAKC 308 SM00364: domain 8 of 12, from 308 to 327: score 15.9, E = 5.2 *->PpsLkeLnvsnNrLteLPeL<-* ++L+eLn +nN++++LPe KIAA0862 308 CSALEELNLENNNISTLPES 327 SM00369: domain 8 of 16, from 309 to 331: score 16.0, E = 4.6 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++L+eL+L+nN++++LP+ ++++ KIAA0862 309 -SALEELNLENNNISTLPESLLSS 331 SM00369: domain 9 of 16, from 332 to 355: score 4.1, E = 1.3e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L +L L +N ++ P g + KIAA0862 332 LVKLNSLTLARNCFQLYPVGGPSQ 355 SM00369: domain 10 of 16, from 356 to 379: score 3.8, E = 1.4e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* + +L+ ++N++ +P g+F+ KIAA0862 356 FSTIYSLNMEHNRINKIPFGIFSR 379 SM00369: domain 11 of 16, from 403 to 425: score 5.0, E = 1e+02 *->LpnLreLdLsnNqLtsLPpgaFqg<-* ++ eL+L NqLt +P+++ +g KIAA0862 403 WTSMVELNLATNQLTKIPEDV-SG 425 SM00369: domain 12 of 16, from 426 to 448: score 19.4, E = 0.5 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++L++L LsnN L+ LP+g+ ++ KIAA0862 426 LVSLEVLILSNNLLKKLPHGL-GN 448 SM00364: domain 9 of 12, from 426 to 445: score 7.2, E = 71 *->PpsLkeLnvsnNrLteLPeL<-* sL+ L snN L++LP KIAA0862 426 LVSLEVLILSNNLLKKLPHG 445 SM00364: domain 10 of 12, from 449 to 468: score 4.6, E = 1.6e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L+eL+ ++N+L++LP KIAA0862 449 LRKLRELDLEENKLESLPNE 468 SM00365: domain 5 of 6, from 449 to 467: score 3.6, E = 2.9e+02 *->LtnLeeLdLsqNkIkkiENLde<-* L +L+eLdL Nk+ E L + KIAA0862 449 LRKLRELDLEENKL---ESLPN 467 SM00369: domain 13 of 16, from 449 to 471: score 19.3, E = 0.54 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L++LreLdL+ N+L+sLP+++ + KIAA0862 449 LRKLRELDLEENKLESLPNEI-AY 471 SM00364: domain 11 of 12, from 472 to 491: score 8.4, E = 50 *->PpsLkeLnvsnNrLteLPeL<-* L++L nN+Lt+LP KIAA0862 472 LKDLQKLVLTNNQLTTLPRG 491 SM00369: domain 14 of 16, from 472 to 494: score 19.1, E = 0.61 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L L++L L nNqLt+LP+g+ ++ KIAA0862 472 LKDLQKLVLTNNQLTTLPRGI-GH 494 SM00365: domain 6 of 6, from 495 to 523: score 5.9, E = 1.5e+02 *->LtnLeeLdLsqNkI.......kkiENLde<-* LtnL++L L+ N++++ +++ +ENL+e KIAA0862 495 LTNLTHLGLGENLLthlpeeiGTLENLEE 523 SM00369: domain 15 of 16, from 495 to 516: score 16.7, E = 3.4 *->LpnLreLdLsnNqLtsLPpgaFqg<-* L+nL++L L+ N Lt+LP+++ g KIAA0862 495 LTNLTHLGLGENLLTHLPEEI--G 516 SM00364: domain 12 of 12, from 495 to 514: score 3.8, E = 2e+02 *->PpsLkeLnvsnNrLteLPeL<-* +L+ L+ ++N Lt LPe KIAA0862 495 LTNLTHLGLGENLLTHLPEE 514 SM00369: domain 16 of 16, from 518 to 542: score 6.1, E = 74 *->LpnLreLdLsnN.qLtsLPpgaFqg<-* L nL+eL+L++N++L sLP ++ + KIAA0862 518 LENLEELYLNDNpNLHSLPLELALC 542 //