hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-15114323/chunk_1/iprscan-20080502-15114323.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0862 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00560.23.ls Leucine Rich Repeat 226.3 6.1e-65 19 PF00560.23.fs Leucine Rich Repeat 190.9 2.8e-54 19 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00560.23.ls 1/19 126 147 .. 1 24 [] 14.2 0.43 PF00560.23.fs 1/19 126 147 .. 1 24 [] 12.4 0.025 PF00560.23.ls 2/19 149 170 .. 1 24 [] 12.3 1.3 PF00560.23.fs 3/19 172 193 .. 1 24 [] 12.7 0.021 PF00560.23.ls 3/19 172 193 .. 1 24 [] 14.5 0.35 PF00560.23.fs 4/19 195 216 .. 1 24 [] 13.5 0.012 PF00560.23.ls 4/19 195 216 .. 1 24 [] 15.3 0.2 PF00560.23.ls 5/19 218 239 .. 1 24 [] 9.4 4.6 PF00560.23.ls 6/19 241 262 .. 1 24 [] 15.4 0.2 PF00560.23.fs 6/19 241 262 .. 1 24 [] 13.5 0.012 PF00560.23.ls 7/19 264 285 .. 1 24 [] 12.2 1.4 PF00560.23.ls 8/19 287 308 .. 1 24 [] 11.2 2.2 PF00560.23.ls 9/19 310 332 .. 1 24 [] 16.5 0.093 PF00560.23.fs 9/19 310 332 .. 1 24 [] 14.6 0.0062 PF00560.23.ls 11/19 358 380 .. 1 24 [] 8.0 8.5 PF00560.23.ls 12/19 382 403 .. 1 24 [] 8.0 8.4 PF00560.23.ls 13/19 405 426 .. 1 24 [] 9.8 3.9 PF00560.23.fs 14/19 428 449 .. 1 24 [] 15.0 0.0046 PF00560.23.ls 14/19 428 449 .. 1 24 [] 16.9 0.068 PF00560.23.ls 15/19 451 472 .. 1 24 [] 15.8 0.14 PF00560.23.fs 15/19 451 472 .. 1 24 [] 13.9 0.0092 PF00560.23.ls 16/19 474 495 .. 1 24 [] 15.3 0.2 PF00560.23.fs 16/19 474 495 .. 1 24 [] 13.5 0.012 PF00560.23.ls 17/19 497 518 .. 1 24 [] 12.1 1.5 PF00560.23.ls 18/19 520 542 .. 1 24 [] 13.4 0.76 PF00560.23.fs 18/19 520 542 .. 1 24 [] 11.5 0.043 Alignments of top-scoring domains: PF00560.23.ls: domain 1 of 19, from 126 to 147: score 14.2, E = 0.43 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+eL+L++ N +l+ slp+++++l KIAA0862 126 QLTELYLYS-N-KLQ-SLPAEVgCL 147 PF00560.23.fs: domain 1 of 19, from 126 to 147: score 12.4, E = 0.025 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+eL+L++ N +l+ slp+++++l KIAA0862 126 QLTELYLYS-N-KLQ-SLPAEVgCL 147 PF00560.23.ls: domain 2 of 19, from 149 to 170: score 12.3, E = 1.3 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL +L Ls N slt slp+sl+nl KIAA0862 149 NLMTLALSE-N-SLT-SLPDSLdNL 170 PF00560.23.fs: domain 3 of 19, from 172 to 193: score 12.7, E = 0.021 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+ LdL++ N +l +++ps + l KIAA0862 172 KLRMLDLRH-N-KL-REIPSVVyRL 193 PF00560.23.ls: domain 3 of 19, from 172 to 193: score 14.5, E = 0.35 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+ LdL++ N +l +++ps + l KIAA0862 172 KLRMLDLRH-N-KL-REIPSVVyRL 193 PF00560.23.fs: domain 4 of 19, from 195 to 216: score 13.5, E = 0.012 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++L+L+ N ++t +++++++nl KIAA0862 195 SLTTLYLRF-N-RIT-TVEKDIkNL 216 PF00560.23.ls: domain 4 of 19, from 195 to 216: score 15.3, E = 0.2 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L++L+L+ N ++t +++++++nl KIAA0862 195 SLTTLYLRF-N-RIT-TVEKDIkNL 216 PF00560.23.ls: domain 5 of 19, from 218 to 239: score 9.4, E = 4.6 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L L+++ N ++ + lp++++ l KIAA0862 218 KLSMLSIRE-N-KI-KQLPAEIgEL 239 PF00560.23.ls: domain 6 of 19, from 241 to 262: score 15.4, E = 0.2 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL +Ld+ + N +l+ +lp++++n+ KIAA0862 241 NLITLDVAH-N-QLE-HLPKEIgNC 262 PF00560.23.fs: domain 6 of 19, from 241 to 262: score 13.5, E = 0.012 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL +Ld+ + N +l+ +lp++++n+ KIAA0862 241 NLITLDVAH-N-QLE-HLPKEIgNC 262 PF00560.23.ls: domain 7 of 19, from 264 to 285: score 12.2, E = 1.4 *->nLeeLdLsgCNpsltgslpssl.nl<-* ++++LdL++ N l +lp+ ++nl KIAA0862 264 QITNLDLQH-N-ELL-DLPDTIgNL 285 PF00560.23.ls: domain 8 of 19, from 287 to 308: score 11.2, E = 2.2 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L L L++ N +l+ +p sl ++ KIAA0862 287 SLSRLGLRY-N-RLS-AIPRSLaKC 308 PF00560.23.ls: domain 9 of 19, from 310 to 332: score 16.5, E = 0.093 *->nLeeLdLsgCNpsltgslpss.l.nl<-* LeeL+L++ N +++ +lp+s l++l KIAA0862 310 ALEELNLEN-N-NIS-TLPESlLsSL 332 PF00560.23.fs: domain 9 of 19, from 310 to 332: score 14.6, E = 0.0062 *->nLeeLdLsgCNpsltgslpss.l.nl<-* LeeL+L++ N +++ +lp+s l++l KIAA0862 310 ALEELNLEN-N-NIS-TLPESlLsSL 332 PF00560.23.ls: domain 11 of 19, from 358 to 380: score 8.0, E = 8.5 *->nLeeLdLsgCNpsltgslpss.l.nl<-* ++ +L++++ N +++ ++p + ++ KIAA0862 358 TIYSLNMEH-N-RIN-KIPFGiFsRA 380 PF00560.23.ls: domain 12 of 19, from 382 to 403: score 8.0, E = 8.4 *->nLeeLdLsgCNpsltgslpssl.nl<-* L +L++ + N +lt slp +++ KIAA0862 382 VLSKLNMKD-N-QLT-SLPLDFgTW 403 PF00560.23.ls: domain 13 of 19, from 405 to 426: score 9.8, E = 3.9 *->nLeeLdLsgCNpsltgslpssl.nl<-* + eL+L N +lt ++p+++++l KIAA0862 405 SMVELNLAT-N-QLT-KIPEDVsGL 426 PF00560.23.fs: domain 14 of 19, from 428 to 449: score 15.0, E = 0.0046 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Le+L Ls+ N l ++lp++l+nl KIAA0862 428 SLEVLILSN-N-LL-KKLPHGLgNL 449 PF00560.23.ls: domain 14 of 19, from 428 to 449: score 16.9, E = 0.068 *->nLeeLdLsgCNpsltgslpssl.nl<-* +Le+L Ls+ N l ++lp++l+nl KIAA0862 428 SLEVLILSN-N-LL-KKLPHGLgNL 449 PF00560.23.ls: domain 15 of 19, from 451 to 472: score 15.8, E = 0.14 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+eLdL+ N +l+ slp+++ l KIAA0862 451 KLRELDLEE-N-KLE-SLPNEIaYL 472 PF00560.23.fs: domain 15 of 19, from 451 to 472: score 13.9, E = 0.0092 *->nLeeLdLsgCNpsltgslpssl.nl<-* +L+eLdL+ N +l+ slp+++ l KIAA0862 451 KLRELDLEE-N-KLE-SLPNEIaYL 472 PF00560.23.ls: domain 16 of 19, from 474 to 495: score 15.3, E = 0.2 *->nLeeLdLsgCNpsltgslpssl.nl<-* L++L L + N +lt +lp ++++l KIAA0862 474 DLQKLVLTN-N-QLT-TLPRGIgHL 495 PF00560.23.fs: domain 16 of 19, from 474 to 495: score 13.5, E = 0.012 *->nLeeLdLsgCNpsltgslpssl.nl<-* L++L L + N +lt +lp ++++l KIAA0862 474 DLQKLVLTN-N-QLT-TLPRGIgHL 495 PF00560.23.ls: domain 17 of 19, from 497 to 518: score 12.1, E = 1.5 *->nLeeLdLsgCNpsltgslpssl.nl<-* nL++L L+ N lt +lp++++ l KIAA0862 497 NLTHLGLGE-N-LLT-HLPEEIgTL 518 PF00560.23.ls: domain 18 of 19, from 520 to 542: score 13.4, E = 0.76 *->nLeeLdLsgCNpsltgslpssl.nl<-* nLeeL+L++ Np+l slp +l + KIAA0862 520 NLEELYLND-NPNLH-SLPLELaLC 542 PF00560.23.fs: domain 18 of 19, from 520 to 542: score 11.5, E = 0.043 *->nLeeLdLsgCNpsltgslpssl.nl<-* nLeeL+L++ Np+l slp +l + KIAA0862 520 NLEELYLND-NPNLH-SLPLELaLC 542 //