hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-15082882/chunk_1/iprscan-20080502-15082882.nocrc
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Query sequence: KIAA0860
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF04564.6.fs U-box domain                                   154.0    3.9e-55   1
PF04564.6.ls U-box domain                                   156.0      9e-44   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF04564.6.fs   1/1     268   348 ..     1    81 []   154.0  3.9e-55
PF04564.6.ls   1/1     268   348 ..     1    81 []   156.0    9e-44

Alignments of top-scoring domains:
PF04564.6.fs: domain 1 of 1, from 268 to 348: score 154.0, E = 3.9e-55
                   *->DiPDEFlDPItleLMkDPVilPSGkityDRstIerHLlsEA.WGvdp
                      D+P+EFlDPItle+M++P+ lPSG +++D+st+e++++sEA+WG+ p
    KIAA0860   268    DVPEEFLDPITLEIMPCPMLLPSG-KVIDQSTLEKCNRSEAtWGRVP 313  

                   tDPftGRepLthdeLiPNleLKekIdawleekrea<-*
                   +DPftG+++++h+++ P+++LK++Id++l +++++   
    KIAA0860   314 SDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIP    348  

PF04564.6.ls: domain 1 of 1, from 268 to 348: score 156.0, E = 9e-44
                   *->DiPDEFlDPItleLMkDPVilPSGkityDRstIerHLlsEA.WGvdp
                      D+P+EFlDPItle+M++P+ lPSG +++D+st+e++++sEA+WG+ p
    KIAA0860   268    DVPEEFLDPITLEIMPCPMLLPSG-KVIDQSTLEKCNRSEAtWGRVP 313  

                   tDPftGRepLthdeLiPNleLKekIdawleekrea<-*
                   +DPftG+++++h+++ P+++LK++Id++l +++++   
    KIAA0860   314 SDPFTGVAFTPHSQPLPHPSLKARIDHFLLQHSIP    348  

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