hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14444060/chunk_1/iprscan-20080502-14444060.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0846 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00617.10.ls RasGEF domain 133.0 7.6e-37 1 PF00617.10.fs RasGEF domain 131.2 2.7e-36 1 PF00130.12.fs Phorbol esters/diacylglycerol binding domain 68.3 2.6e-18 1 PF00130.12.ls Phorbol esters/diacylglycerol binding domain 70.3 5.7e-18 1 PF00618.10.fs Guanine nucleotide exchange factor for Ras-l 45.9 8.4e-13 1 PF00618.10.ls Guanine nucleotide exchange factor for Ras-l 46.8 6.9e-11 1 PF00036.22.ls EF hand 43.1 8.5e-10 2 PF00036.22.fs EF hand 39.1 1.3e-09 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00618.10.ls 1/1 2 104 .. 1 109 [] 46.8 6.9e-11 PF00618.10.fs 1/1 10 104 .. 3 109 .] 45.9 8.4e-13 PF00617.10.fs 1/1 148 334 .. 1 227 [] 131.2 2.7e-36 PF00617.10.ls 1/1 148 334 .. 1 227 [] 133.0 7.6e-37 PF00036.22.ls 1/2 425 453 .. 1 29 [] 24.9 0.00026 PF00036.22.fs 1/2 425 453 .. 1 29 [] 22.9 3.4e-05 PF00036.22.fs 2/2 454 482 .. 1 29 [] 16.2 0.0022 PF00130.12.fs 1/1 496 548 .. 1 55 [] 68.3 2.6e-18 PF00130.12.ls 1/1 496 548 .. 1 55 [] 70.3 5.7e-18 Alignments of top-scoring domains: PF00618.10.ls: domain 1 of 1, from 2 to 104: score 46.8, E = 6.9e-11 *->qv......kagtlekLvehLt...shskl.Dss.FvstFLlTYRsFt ++++++ +ka+tl+ L+ +++ ++++ D+s + + Ll++R++ KIAA0846 2 TMgssglgKAATLDELLCTCIemfDDNGElDNSyLPRIVLLMHRWYL 48 tpaeLlekLieRywseippp.nlqssknsweekkkllkpiqlrvlnvlrh +++eL ekL+ y ++ ++ +l+++ ++r+ KIAA0846 49 SSTELAEKLLCMY--RNATGeSC--------------NEFRLKICYFMRY 82 WvenyfeDFadeddpellsrLleF<-* W+ +++ +F ++d l+ +eF KIAA0846 83 WILKFPAEF--NLDLGLIRMTEEF 104 PF00618.10.fs: domain 1 of 1, from 10 to 104: score 45.9, E = 8.4e-13 *->kagtlekLvehLt...shskl.Dss.FvstFLlTYRsFttpaeLlek ka+tl+ L+ +++ ++++ D+s + + Ll++R++ +++eL ek KIAA0846 10 KAATLDELLCTCIemfDDNGElDNSyLPRIVLLMHRWYLSSTELAEK 56 LieRywseippp.nlqssknsweekkkllkpiqlrvlnvlrhWvenyfeD L+ y ++ ++ +l+++ ++r+W+ +++ + KIAA0846 57 LLCMY--RNATGeSC--------------NEFRLKICYFMRYWILKFPAE 90 FadeddpellsrLleF<-* F ++d l+ +eF KIAA0846 91 F--NLDLGLIRMTEEF 104 PF00617.10.fs: domain 1 of 1, from 148 to 334: score 131.2, E = 2.7e-36 *->Llld...plelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkk Ll+d+ +p elA+ LT lEh++f++I+ + v+ KIAA0846 148 LLFDhlePIELAEHLTFLEHKSFRRISFTDYQS--------YVIHGC 186 sfkvkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkR ++n p++ i++fN + +v ++l++ +p R KIAA0846 187 --LENN---PTLERSIALFNGISKWVQLMVLSKP-----------TPQQR 220 aeviqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqsl aevi kfI+VA ++++L+NFn+l+a++ +L++s+I+RLk T + ++++ KIAA0846 221 AEVITKFINVAKKLLQLKNFNTLMAVVGGLSHSSISRLKETHSHLSSEVT 270 klIfeeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGv k+ + e+ +L++s++N+ nyR+ ++ + +P +Gv KIAA0846 271 KN-WNEMTELVSSNGNYCNYRKAFADCDGF-------------KIPILGV 306 YLsDLtfleeGnpdyleekKINtnlvNFsKrrk<-* L+DL +++ pd +e n+vN K+++ KIAA0846 307 HLKDLIAVHVIFPDWTE-----ENKVNIVKMHQ 334 PF00617.10.ls: domain 1 of 1, from 148 to 334: score 133.0, E = 7.6e-37 *->Llld...plelAkQLTLlEhelfkkItpfefLgsKmKHEGPqvWgkk Ll+d+ +p elA+ LT lEh++f++I+ + v+ KIAA0846 148 LLFDhlePIELAEHLTFLEHKSFRRISFTDYQS--------YVIHGC 186 sfkvkneripnidktiknfNqltnfvsetIlkqeFPTNPEFSKkvdpkkR ++n p++ i++fN + +v ++l++ +p R KIAA0846 187 --LENN---PTLERSIALFNGISKWVQLMVLSKP-----------TPQQR 220 aeviqkfIqVAdhcReLnNFnSllaIisALysspIyRLkkTWekvppqsl aevi kfI+VA ++++L+NFn+l+a++ +L++s+I+RLk T + ++++ KIAA0846 221 AEVITKFINVAKKLLQLKNFNTLMAVVGGLSHSSISRLKETHSHLSSEVT 270 klIfeeLnkLmdsdrNfsnyRelLksigplappnLdddfvraPCVPFfGv k+ + e+ +L++s++N+ nyR+ ++ + +P +Gv KIAA0846 271 KN-WNEMTELVSSNGNYCNYRKAFADCDGF-------------KIPILGV 306 YLsDLtfleeGnpdyleekKINtnlvNFsKrrk<-* L+DL +++ pd +e n+vN K+++ KIAA0846 307 HLKDLIAVHVIFPDWTE-----ENKVNIVKMHQ 334 PF00036.22.ls: domain 1 of 2, from 425 to 453: score 24.9, E = 0.00026 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++ +F+ +D D+DG+Is e+f ++ +++ KIAA0846 425 LVESVFRNYDHDHDGYISQEDFESIAANF 453 PF00036.22.fs: domain 1 of 2, from 425 to 453: score 22.9, E = 3.4e-05 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* ++ +F+ +D D+DG+Is e+f ++ +++ KIAA0846 425 LVESVFRNYDHDHDGYISQEDFESIAANF 453 PF00036.22.fs: domain 2 of 2, from 454 to 482: score 16.2, E = 0.0022 *->elkeaFkefDkDgDGkIsfeEfkaalkkl<-* + + F ++DkD+DG Is++E++a++ + KIAA0846 454 PFLDSFCVLDKDQDGLISKDEMMAYFLRA 482 PF00130.12.fs: domain 1 of 1, from 496 to 548: score 68.3, E = 2.6e-18 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek H+F++ t+ +ptfC+hC+ flwg ++kqG+kC +C+ n+Hk+C + KIAA0846 496 HNFQEM-TYLKPTFCEHCAGFLWG-IIKQGYKCKDCGANCHKQCKDL 540 VppeCgcg<-* ++ C+ KIAA0846 541 LVLACRRF 548 PF00130.12.ls: domain 1 of 1, from 496 to 548: score 70.3, E = 5.7e-18 *->HhFvhrwtfkqptfCdhCgeflwgslgkqGlkCswCklnvHkrChek H+F++ t+ +ptfC+hC+ flwg ++kqG+kC +C+ n+Hk+C + KIAA0846 496 HNFQEM-TYLKPTFCEHCAGFLWG-IIKQGYKCKDCGANCHKQCKDL 540 VppeCgcg<-* ++ C+ KIAA0846 541 LVLACRRF 548 //