hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/smart.HMMs.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14393498/chunk_1/iprscan-20080502-14393498.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0843 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00132 210.1 2e-58 4 SM00153 82.8 4.3e-20 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00132 1/4 30 81 .. 1 52 [] 42.5 5.6e-08 SM00132 2/4 89 141 .. 1 52 [] 50.0 3.1e-10 SM00132 3/4 158 209 .. 1 52 [] 73.2 3.1e-17 SM00132 4/4 217 269 .. 1 52 [] 44.4 1.6e-08 SM00153 1/1 656 691 .] 1 36 [] 82.8 4.3e-20 Alignments of top-scoring domains: SM00132: domain 1 of 4, from 30 to 81: score 42.5, E = 5.6e-08 *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg.tffekdgk C +Cg g ev+r+ ++++H CF+C++C++ L+ ++ff+k+ + KIAA0843 30 QCYRCGDTCKG-EVVRVHNNHFHIRCFTCQVCGCGLAQsGFFFKNQE 75 lyCkdc<-* C + KIAA0843 76 YICTQD 81 SM00132: domain 2 of 4, from 89 to 141: score 50.0, E = 3.1e-10 *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg..tffekdg +C C+ +Itg ev++alg+++Hp+CF+Cs C+kp+ +++ + + KIAA0843 89 RCDSCRDFITG-EVISALGRTYHPKCFVCSLCRKPFPIgdKVTFSGK 134 klyCkdc<-* + C+ c KIAA0843 135 ECVCQTC 141 SM00132: domain 3 of 4, from 158 to 209: score 73.2, E = 3.1e-17 *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLggtffekdgkl +CagC++ I + l al+k wH++CFkC++C+ L+g++++kdg + KIAA0843 158 HCAGCKEEIKHGQSLLALDKQWHVSCFKCQTCSVILTGEYISKDGVP 204 yCkdc<-* yC+++ KIAA0843 205 YCESD 209 SM00132: domain 4 of 4, from 217 to 269: score 44.4, E = 1.6e-08 *->kCagCgkpItgdevlralgkvwHpeCFkCskCkkpLgg..tffekdg kC C++ I+g +vl+a+gk++Hp C +C +C++ ++++++ + + KIAA0843 217 KCETCDRYISG-RVLEAGGKHYHPTCARCVRCHQMFTEgeEMYLTGS 262 klyCkdc<-* ++ + c KIAA0843 263 EVWHPIC 269 SM00153: domain 1 of 1, from 656 to 691: score 82.8, E = 4.3e-20 *->YLsdeDFeevFgMtkeEFykLPlWKqnqLKKklgLF<-* +Ls+e+F++vFgMt++EF++L+lWK+n+LKK+++LF KIAA0843 656 HLSQEEFYQVFGMTISEFDRLALWKRNELKKQARLF 691 //