hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14343808/chunk_1/iprscan-20080502-14343808.nocrc
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Query sequence: KIAA0840
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00367                                                 314.5    7.7e-90  11
SM00256                                                  45.4    7.4e-09   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00256    1/1     149   189 ..     1    41 []    45.4  7.4e-09
SM00367    1/11    217   242 ..     1    26 []    33.0  4.1e-05
SM00367    2/11    243   268 ..     1    26 []    32.5  5.8e-05
SM00367    3/11    269   294 ..     1    26 []    30.9  0.00017
SM00367    4/11    303   328 ..     1    26 []     7.0       94
SM00367    5/11    329   354 ..     1    26 []    36.1  4.7e-06
SM00367    6/11    355   380 ..     1    26 []    32.6  5.5e-05
SM00367    7/11    381   406 ..     1    26 []    33.3  3.4e-05
SM00367    8/11    407   432 ..     1    26 []    40.4  2.5e-07
SM00367    9/11    433   458 ..     1    26 []    35.3  8.4e-06
SM00367   10/11    459   484 ..     1    26 []    32.8  4.8e-05
SM00367   11/11    485   509 ..     1    26 []     0.7  5.9e+02

Alignments of top-scoring domains:
SM00256: domain 1 of 1, from 149 to 189: score 45.4, E = 7.4e-09
                   *->LPieileeIlskLdpkdllrlrkVsrkwrslidshdfwfkr<-*
                      LP++ + +I+s+L++  l+r+ +V+r+w++l  + ++w+ +   
    KIAA0840   149    LPDHSMVQIFSFLPTNQLCRCARVCRRWYNLAWDPRLWRTI    189  

SM00367: domain 1 of 11, from 217 to 242: score 33.0, E = 4.1e-05
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C +L+++ +sgC+++TD+gl+ +a++   
    KIAA0840   217    CLMLETVTVSGCRRLTDRGLYTIAQC    242  

SM00367: domain 2 of 11, from 243 to 268: score 32.5, E = 5.8e-05
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      Cp L++L +sgC+ni++e+++ ++++   
    KIAA0840   243    CPELRRLEVSGCYNISNEAVFDVVSL    268  

SM00367: domain 3 of 11, from 269 to 294: score 30.9, E = 0.00017
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      CpnL++Ld+sgCs++T+++l   a+    
    KIAA0840   269    CPNLEHLDVSGCSKVTCISLTREASI    294  

SM00367: domain 4 of 11, from 303 to 328: score 7.0, E = 94
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                        ++++Ld+ +C  + Degl  +a     
    KIAA0840   303    QISIRYLDMTDCFVLEDEGLHTIAAH    328  

SM00367: domain 5 of 11, from 329 to 354: score 36.1, E = 4.7e-06
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C++L++L L++C+++TDegl++L+ +   
    KIAA0840   329    CTQLTHLYLRRCVRLTDEGLRYLVIY    354  

SM00367: domain 6 of 11, from 355 to 380: score 32.6, E = 5.5e-05
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C ++keL++s+C+ ++D gl+++ak+   
    KIAA0840   355    CASIKELSVSDCRFVSDFGLREIAKL    380  

SM00367: domain 7 of 11, from 381 to 406: score 33.3, E = 3.4e-05
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                        +L++L++ +C ++TD+g++++ak+   
    KIAA0840   381    ESRLRYLSIAHCGRVTDVGIRYVAKY    406  

SM00367: domain 8 of 11, from 407 to 432: score 40.4, E = 2.5e-07
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C +L++L+ +gC+ iTD+g+ +Lak+   
    KIAA0840   407    CSKLRYLNARGCEGITDHGVEYLAKN    432  

SM00367: domain 9 of 11, from 433 to 458: score 35.3, E = 8.4e-06
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C++Lk+Ld+++C++++D+gl +La +   
    KIAA0840   433    CTKLKSLDIGKCPLVSDTGLECLALN    458  

SM00367: domain 10 of 11, from 459 to 484: score 32.8, E = 4.8e-05
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C nLk+L+L++C+ iT +glq +a +   
    KIAA0840   459    CFNLKRLSLKSCESITGQGLQIVAAN    484  

SM00367: domain 11 of 11, from 485 to 509: score 0.7, E = 5.9e+02
                   *->CpnLkeLdLsgCsniTDeglqaLakg<-*
                      C  L++L++ +C+ ++ e+l+ + +    
    KIAA0840   485    CFDLQTLNVQDCE-VSVEALRFVKRH    509  

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