hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-14143684/chunk_1/iprscan-20080502-14143684.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0828 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF05221.7.fs S-adenosyl-L-homocysteine hydrolase 581.4 2.9e-229 1 PF05221.7.ls S-adenosyl-L-homocysteine hydrolase 583.1 2.5e-172 1 PF00670.12.ls S-adenosyl-L-homocysteine hydrolase, NA 366.4 4.1e-107 1 PF00670.12.fs S-adenosyl-L-homocysteine hydrolase, NA 364.4 1.7e-106 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF05221.7.fs 1/1 192 618 .. 1 320 [] 581.4 2.9e-229 PF05221.7.ls 1/1 192 618 .. 1 320 [] 583.1 2.5e-172 PF00670.12.fs 1/1 378 539 .. 1 163 [] 364.4 1.7e-106 PF00670.12.ls 1/1 378 539 .. 1 163 [] 366.4 4.1e-107 Alignments of top-scoring domains: PF05221.7.fs: domain 1 of 1, from 192 to 618: score 581.4, E = 2.9e-229 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->adYkVKDIsLAaFGRkEielAEnEMPGLMalReeYgpsqPLKGArIa d++VK I++A+FGR+Eie+AE EMP LMalR+++ ++PL GA+I+ KIAA0828 192 SDFCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIV 238 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GCLHMTvQTAVLIETLtALGAeVRWaSCNIFSTQDhAAAAIAvGPtGtPe GC+H T+QTAVL ETL ALGA+ RWa+CNI+ST + +AAA+A KIAA0828 239 GCTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEVAAALA-------- 280 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx kkaGvPVFAWKGETlEEYwWCieraltfkDGddqgpnmILDDGGDATlLi ++G PVFAWKGE + +wWCi+r + +G ++pnmILDDGGD+T+ i KIAA0828 281 -ESGFPVFAWKGESEDDFWWCIDRCV-NVEG--WQPNMILDDGGDLTHWI 326 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx hkGvevEkeykekealPdpekekNeEercvLtllKkslkkdpkKypqlla k Kyp++++ KIAA0828 327 YK-----------------------------------------KYPNMFK 335 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx aIrGvSEETTTGVhRLYklskkGkLlfPAINVNDSVTKSKFD........ +I+G++EE++TGVhRLY+lsk GkL +PA NVNDSVTK+KFD+ +++ KIAA0828 336 KIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDnlyccres 385 RF .................................................. ++ +++++ +++ + ++ +++ + ++ ++ ++ KIAA0828 386 ildglkrttdmmfggkqvvvcgygevgkgccaalkamgsivyvteidpic 435 RF .................................................. ++ + + ++ + + + +++++ ++++ ++ +++ + KIAA0828 436 alqacmdgfrlvklnevirqvdivitctgnknvvtrehldrmknscivcn 485 RF .................................................. ++++++ + + ++++ + ++ ++ ++ +++++ +++ + + KIAA0828 486 mghsnteidvaslrtpeltwervrsqvdhviwpdgkrivllaegrllnls 535 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ...HPSFVMSnSFTNQvLAQiELWtkrdtgkYevgVYvLPKhLDEkVArL ++ P FV S T+Q+LA+iEL++++ g+Y+ +VY+LPK++DE+VA+L KIAA0828 536 cstVPTFVLSITATTQALALIELYNAP-EGRYKQDVYLLPKKMDEYVASL 584 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx HLgkLgvkLTkLtdkQAeYlGvpveGPFKsdhYR<-* HL +++++LT+Ltd+QA+YlG++++GPFK+++YR KIAA0828 585 HLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYR 618 PF05221.7.ls: domain 1 of 1, from 192 to 618: score 583.1, E = 2.5e-172 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->adYkVKDIsLAaFGRkEielAEnEMPGLMalReeYgpsqPLKGArIa d++VK I++A+FGR+Eie+AE EMP LMalR+++ ++PL GA+I+ KIAA0828 192 SDFCVKNIKQAEFGRREIEIAEQEMPALMALRKRAQGEKPLAGAKIV 238 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx GCLHMTvQTAVLIETLtALGAeVRWaSCNIFSTQDhAAAAIAvGPtGtPe GC+H T+QTAVL ETL ALGA+ RWa+CNI+ST + +AAA+A KIAA0828 239 GCTHITAQTAVLMETLGALGAQCRWAACNIYSTLNEVAAALA-------- 280 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx kkaGvPVFAWKGETlEEYwWCieraltfkDGddqgpnmILDDGGDATlLi ++G PVFAWKGE + +wWCi+r + +G ++pnmILDDGGD+T+ i KIAA0828 281 -ESGFPVFAWKGESEDDFWWCIDRCV-NVEG--WQPNMILDDGGDLTHWI 326 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx hkGvevEkeykekealPdpekekNeEercvLtllKkslkkdpkKypqlla k Kyp++++ KIAA0828 327 YK-----------------------------------------KYPNMFK 335 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx aIrGvSEETTTGVhRLYklskkGkLlfPAINVNDSVTKSKFD........ +I+G++EE++TGVhRLY+lsk GkL +PA NVNDSVTK+KFD+ +++ KIAA0828 336 KIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFDnlyccres 385 RF .................................................. ++ +++++ +++ + ++ +++ + ++ ++ ++ KIAA0828 386 ildglkrttdmmfggkqvvvcgygevgkgccaalkamgsivyvteidpic 435 RF .................................................. ++ + + ++ + + + +++++ ++++ ++ +++ + KIAA0828 436 alqacmdgfrlvklnevirqvdivitctgnknvvtrehldrmknscivcn 485 RF .................................................. ++++++ + + ++++ + ++ ++ ++ +++++ +++ + + KIAA0828 486 mghsnteidvaslrtpeltwervrsqvdhviwpdgkrivllaegrllnls 535 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ...HPSFVMSnSFTNQvLAQiELWtkrdtgkYevgVYvLPKhLDEkVArL ++ P FV S T+Q+LA+iEL++++ g+Y+ +VY+LPK++DE+VA+L KIAA0828 536 cstVPTFVLSITATTQALALIELYNAP-EGRYKQDVYLLPKKMDEYVASL 584 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx HLgkLgvkLTkLtdkQAeYlGvpveGPFKsdhYR<-* HL +++++LT+Ltd+QA+YlG++++GPFK+++YR KIAA0828 585 HLPTFDAHLTELTDEQAKYLGLNKNGPFKPNYYR 618 PF00670.12.fs: domain 1 of 1, from 378 to 539: score 364.4, E = 1.7e-106 *->NlYGcReSLiDGikRaTDvmiaGKvavvcGYGDVGKGcAasLkgqGA NlY+cReS++DG+kR+TD+m++GK++vvcGYG+VGKGc+a+Lk++G+ KIAA0828 378 NLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGS 424 rVivTEiDPIcALQAaMeGfeVvtleevvkkadifVTtTGnkDiitlehl +V+vTEiDPIcALQA+M+Gf+ v+l+ev++++di++T+TGnk+++t+ehl KIAA0828 425 IVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHL 474 ekmkddaIVcNiGHfdnEIdvagLeanpaikkeniKPqvDrytlpdGkki ++mk+++IVcN+GH+++EIdva+L+++ ++++e++++qvD++++pdGk+i KIAA0828 475 DRMKNSCIVCNMGHSNTEIDVASLRTP-ELTWERVRSQVDHVIWPDGKRI 523 IlLaeGRLlNLGcAtg<-* +lLaeGRLlNL+c+t+ KIAA0828 524 VLLAEGRLLNLSCSTV 539 PF00670.12.ls: domain 1 of 1, from 378 to 539: score 366.4, E = 4.1e-107 *->NlYGcReSLiDGikRaTDvmiaGKvavvcGYGDVGKGcAasLkgqGA NlY+cReS++DG+kR+TD+m++GK++vvcGYG+VGKGc+a+Lk++G+ KIAA0828 378 NLYCCRESILDGLKRTTDMMFGGKQVVVCGYGEVGKGCCAALKAMGS 424 rVivTEiDPIcALQAaMeGfeVvtleevvkkadifVTtTGnkDiitlehl +V+vTEiDPIcALQA+M+Gf+ v+l+ev++++di++T+TGnk+++t+ehl KIAA0828 425 IVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITCTGNKNVVTREHL 474 ekmkddaIVcNiGHfdnEIdvagLeanpaikkeniKPqvDrytlpdGkki ++mk+++IVcN+GH+++EIdva+L+++ ++++e++++qvD++++pdGk+i KIAA0828 475 DRMKNSCIVCNMGHSNTEIDVASLRTP-ELTWERVRSQVDHVIWPDGKRI 523 IlLaeGRLlNLGcAtg<-* +lLaeGRLlNL+c+t+ KIAA0828 524 VLLAEGRLLNLSCSTV 539 //