hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-14061346/chunk_1/iprscan-20080502-14061346.nocrc
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Query sequence: KIAA0823
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00023.20.ls Ankyrin repeat                                 161.4    2.2e-45   5
PF00023.20.fs Ankyrin repeat                                 153.6    4.9e-43   5

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00023.20.ls   1/5      78   110 ..     1    33 []     8.4      1.8
PF00023.20.fs   1/5      82   110 ..     5    33 .]     8.6      0.2
PF00023.20.ls   2/5     111   143 ..     1    33 []    45.4  1.8e-10
PF00023.20.fs   2/5     111   143 ..     1    33 []    43.4    4e-11
PF00023.20.ls   3/5     144   176 ..     1    33 []    40.8  4.4e-09
PF00023.20.fs   3/5     144   176 ..     1    33 []    38.8  7.8e-10
PF00023.20.fs   4/5     239   271 ..     1    33 []    24.2    9e-06
PF00023.20.ls   4/5     239   271 ..     1    33 []    26.2  0.00011
PF00023.20.fs   5/5     272   304 ..     1    33 []    38.5  9.4e-10
PF00023.20.ls   5/5     272   304 ..     1    33 []    40.5  5.4e-09

Alignments of top-scoring domains:
PF00023.20.ls: domain 1 of 5, from 78 to 110: score 8.4, E = 1.8
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +   +L  A+lr+++e v+++l++  ++++ +    
    KIAA0823    78    EASVALLEASLRNDAEEVRYFLKNKVSPDLCNE    110  

PF00023.20.fs: domain 1 of 5, from 82 to 110: score 8.6, E = 0.2
                   *->PLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      +L  A+lr+++e v+++l++  ++++ +    
    KIAA0823    82    ALLEASLRNDAEEVRYFLKNKVSPDLCNE    110  

PF00023.20.ls: domain 2 of 5, from 111 to 143: score 45.4, E = 1.8e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG T+LH  ++ + +e+vklLls+GA++na+d+   
    KIAA0823   111    DGLTALHQCCIDNFEEIVKLLLSHGANVNAKDN    143  

PF00023.20.fs: domain 2 of 5, from 111 to 143: score 43.4, E = 4e-11
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG T+LH  ++ + +e+vklLls+GA++na+d+   
    KIAA0823   111    DGLTALHQCCIDNFEEIVKLLLSHGANVNAKDN    143  

PF00023.20.ls: domain 3 of 5, from 144 to 176: score 40.8, E = 4.4e-09
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      + +TPLH Aa +g++++vk L+++GAdl a++    
    KIAA0823   144    ELWTPLHAAATCGHINLVKILVQYGADLLAVNS    176  

PF00023.20.fs: domain 3 of 5, from 144 to 176: score 38.8, E = 7.8e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      + +TPLH Aa +g++++vk L+++GAdl a++    
    KIAA0823   144    ELWTPLHAAATCGHINLVKILVQYGADLLAVNS    176  

PF00023.20.fs: domain 4 of 5, from 239 to 271: score 24.2, E = 9e-06
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G T LH+A  +g+l+ ++lLl++G  ++++d    
    KIAA0823   239    QGATLLHIAGANGYLRAAELLLDHGVRVDVKDW    271  

PF00023.20.ls: domain 4 of 5, from 239 to 271: score 26.2, E = 0.00011
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                       G T LH+A  +g+l+ ++lLl++G  ++++d    
    KIAA0823   239    QGATLLHIAGANGYLRAAELLLDHGVRVDVKDW    271  

PF00023.20.fs: domain 5 of 5, from 272 to 304: score 38.5, E = 9.4e-10
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG+ PLH Aa++g++++++lL+s+GA+l a++    
    KIAA0823   272    DGWEPLHAAAFWGQMQMAELLVSHGASLSARTS    304  

PF00023.20.ls: domain 5 of 5, from 272 to 304: score 40.5, E = 5.4e-09
                   *->dGfTPLHlAalrgnlevvklLlsqGAdlnaqdd<-*
                      dG+ PLH Aa++g++++++lL+s+GA+l a++    
    KIAA0823   272    DGWEPLHAAAFWGQMQMAELLVSHGASLSARTS    304  

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