hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13460686/chunk_1/iprscan-20080502-13460686.nocrc
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Query sequence: KIAA0812
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00008                                                  85.0      9e-21   1
SM00303                                                  80.7    1.8e-19   1
SM00181                                                  40.4    2.3e-07   2
SM00180                                                  38.9      7e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00181    1/2       1    29 [.     1    32 []    12.9       18
SM00181    2/2      31    67 ..     1    32 []    27.5   0.0018
SM00180    1/1     124   169 ..     1    42 []    38.9    7e-07
SM00008    1/1     172   239 ..     1    89 []    85.0    9e-21
SM00303    1/1     528   581 ..     1    51 []    80.7  1.8e-19

Alignments of top-scoring domains:
SM00181: domain 1 of 2, from 1 to 29: score 12.9, E = 18
                   *->eCapCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                         pC ++     + C++   +++C+C+ pGy+g+ C+   
    KIAA0812     1    ---PCPPH-----ADCRdlwqTFSCtCQ-PGYYGpGCV    29   

SM00181: domain 2 of 2, from 31 to 67: score 27.5, E = 0.0018
                   *->eCa..pCsnGgtEqnGtCi.......sytC.CpgpGytg.rCe<-*
                       C+ +pC+n      G C++ ++ +++ytC+C   Gy g++Ce   
    KIAA0812    31    ACLlnPCQNQ-----GSCRhlpgaphGYTCdCV-GGYFGhHCE    67   

SM00180: domain 1 of 1, from 124 to 169: score 38.9, E = 7e-07
                   *->CdCnlpppvG.....Cdp.tGqClnCkpnttGGrrCdderCapGyy.
                      CdC+   pvG+++++C p++GqC+ C+p+  G r+C+   C   + +
    KIAA0812   124    CDCY---PVGstsrsCAPhSGQCP-CRPGALG-RQCN--SCDSPFAe 163  

                   ....gC<-*
                    + +gC   
    KIAA0812   164 vtasGC    169  

SM00008: domain 1 of 1, from 172 to 239: score 85.0, E = 9e-21
                   *->tdlgCpatwDgiiCWpsTpaGqlvavpCPeyfsgfsnktggNrtqGn
                       + +Cp++ + +++Wp+T++G l++vpCP+++ g++  ++       
    KIAA0812   172    LYDACPKSLRSGVWWPQTKFGVLATVPCPRGALGLRGAGA------- 211  

                   asRnCtedtGvGgWsepfpgaeSnrtWpnysnCtsndyeelk<-*
                   a+R+C+e     gW+e           p+++nCts+ ++el+   
    KIAA0812   212 AVRLCDEAQ---GWLE-----------PDLFNCTSPAFRELS    239  

SM00303: domain 1 of 1, from 528 to 581: score 80.7, E = 1.8e-19
                   *->snpiCvfWdese....tgeWstrGCelvetnkpthttCsCnHLTsFA
                      s++iCv+Wd     +++g+W++r+Celv++n+ +h++C+C++ ++F+
    KIAA0812   528    SKAICVQWDPPGlaeqHGVWTARDCELVHRNG-SHARCRCSRTGTFG 573  

                   vLmdvspn<-*
                   vLmd+sp+   
    KIAA0812   574 VLMDASPR    581  

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