hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13460686/chunk_1/iprscan-20080502-13460686.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0812 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00002.15.ls 7 transmembrane receptor (Secretin family 311.9 1e-90 1 PF00002.15.fs 7 transmembrane receptor (Secretin family 310.0 4e-90 1 PF02793.12.ls Hormone receptor domain 76.1 1e-19 1 PF02793.12.fs Hormone receptor domain 74.3 1.1e-19 1 PF01825.11.fs Latrophilin/CL-1-like GPS domain 65.0 1.5e-18 1 PF01825.11.ls Latrophilin/CL-1-like GPS domain 66.9 5.9e-17 1 PF00008.17.fs EGF-like domain 58.0 2.3e-15 2 PF00008.17.ls EGF-like domain 57.7 3.5e-14 2 PF00053.14.fs Laminin EGF-like (Domains III and V) 43.2 7.3e-12 2 PF00053.14.ls Laminin EGF-like (Domains III and V) 35.8 1.3e-07 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00008.17.ls 1/2 2 28 .. 1 38 [] 20.2 0.0071 PF00008.17.ls 2/2 32 66 .. 1 38 [] 37.5 4.1e-08 PF00008.17.fs 2/2 32 66 .. 1 38 [] 35.7 4.1e-09 PF00053.14.fs 2/2 124 157 .. 1 43 [. 33.3 5.3e-09 PF00053.14.ls 2/2 124 169 .. 1 59 [] 33.5 6.8e-07 PF02793.12.ls 1/1 173 235 .. 1 78 [] 76.1 1e-19 PF02793.12.fs 1/1 173 235 .. 1 78 [] 74.3 1.1e-19 PF01825.11.ls 1/1 528 576 .. 1 48 [] 66.9 5.9e-17 PF01825.11.fs 1/1 528 576 .. 1 48 [] 65.0 1.5e-18 PF00002.15.fs 1/1 588 830 .. 1 293 [] 310.0 4e-90 PF00002.15.ls 1/1 588 830 .. 1 293 [] 311.9 1e-90 Alignments of top-scoring domains: PF00008.17.ls: domain 1 of 2, from 2 to 28: score 20.2, E = 0.0071 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+p+ + C+d++++++C C+pG y G+ C KIAA0812 2 CPPH-------ADCRDLWQTFSCTCQPG----YYGPGC 28 PF00008.17.ls: domain 2 of 2, from 32 to 66: score 37.5, E = 4.1e-08 *->CspnngpCsngGtCvdtp...ggytCeCppGyfllytGkrC<-* C n pC+n G C+ +p+ ++gytC+C G y G++C KIAA0812 32 CLLN--PCQNQGSCRHLPgapHGYTCDCVGG----YFGHHC 66 PF00008.17.fs: domain 2 of 2, from 32 to 66: score 35.7, E = 4.1e-09 *->CspnngpCsngGtCvdtp...ggytCeCppGyfllytGkrC<-* C n pC+n G C+ +p+ ++gytC+C G y G++C KIAA0812 32 CLLN--PCQNQGSCRHLPgapHGYTCDCVGG----YFGHHC 66 PF00053.14.fs: domain 2 of 2, from 124 to 157: score 33.3, E = 5.3e-09 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrC<-* CdC p+Gs+s +C + ++GqC+ C+p+ Gr+C+ C KIAA0812 124 CDCYPVGSTS-RSCAP-------HSGQCP-CRPGALGRQCNSC 157 PF00053.14.ls: domain 2 of 2, from 124 to 169: score 33.5, E = 6.8e-07 *->CdCnphGslsddtCdsddelfgeetGqClkCkpnvtGrrCdrCkpGy CdC p+Gs+s +C + ++GqC+ C+p+ Gr+C+ C + KIAA0812 124 CDCYPVGSTS-RSCAP-------HSGQCP-CRPGALGRQCNSCDSPF 161 yglpsgdpgqgC<-* + gC KIAA0812 162 AEV---TAS-GC 169 PF02793.12.ls: domain 1 of 1, from 173 to 235: score 76.1, E = 1e-19 *->glgCprtwDgitCWPrtpaGqlvvvpCPdyfsgfnydttgdfssgna +++Cp++ +++WP+t++G+l++vpCP+++ g + + a KIAA0812 173 YDACPKSLRSGVWWPQTKFGVLATVPCPRGALGLRGAGA-------A 212 yRnClenGwwerhpnsnwpwpnysaCtspey<-* +R C+e ++w p++++Ctsp + KIAA0812 213 VRLCDEAQGWL--------EPDLFNCTSPAF 235 PF02793.12.fs: domain 1 of 1, from 173 to 235: score 74.3, E = 1.1e-19 *->glgCprtwDgitCWPrtpaGqlvvvpCPdyfsgfnydttgdfssgna +++Cp++ +++WP+t++G+l++vpCP+++ g + + a KIAA0812 173 YDACPKSLRSGVWWPQTKFGVLATVPCPRGALGLRGAGA-------A 212 yRnClenGwwerhpnsnwpwpnysaCtspey<-* +R C+e ++w p++++Ctsp + KIAA0812 213 VRLCDEAQGWL--------EPDLFNCTSPAF 235 PF01825.11.ls: domain 1 of 1, from 528 to 576: score 66.9, E = 5.9e-17 *->snptCvfWdese.ggq.GgWstdGCqlgvssndthttClCnHLTsFA s+++Cv+Wd +q+G W+++ C+l v++n +h++C+C++ ++F+ KIAA0812 528 SKAICVQWDPPGlAEQhGVWTARDCEL-VHRNGSHARCRCSRTGTFG 573 vLm<-* vLm KIAA0812 574 VLM 576 PF01825.11.fs: domain 1 of 1, from 528 to 576: score 65.0, E = 1.5e-18 *->snptCvfWdese.ggq.GgWstdGCqlgvssndthttClCnHLTsFA s+++Cv+Wd +q+G W+++ C+l v++n +h++C+C++ ++F+ KIAA0812 528 SKAICVQWDPPGlAEQhGVWTARDCEL-VHRNGSHARCRCSRTGTFG 573 vLm<-* vLm KIAA0812 574 VLM 576 PF00002.15.fs: domain 1 of 1, from 588 to 830: score 310.0, E = 4e-90 *->lllLkviytVGyslSLvaLllAiaifllFRkLhCtRNyIHlNLfaSf l+lL+v+++V ++S +aL+l+ ai+l +R+L+++ IH N a++ KIAA0812 588 LELLAVFTHVVVAVSVAALVLTAAILLSLRSLKSNVRGIHANVAAAL 634 iLraisflikdavlfnsvglseadqlsweeslhcsasagkitmivvVgCk +++++fl+++++++n+ C+ KIAA0812 635 GVAELLFLLGIHRTHNQLV-----------------------------CT 655 vvavflhYfflaNFfWmLvEGlYLhtLlvvtVevffserkylwwYlliGW +va++lhYffl++F+W++v Gl+L+++ Ve+++ +r+ +++Y+++GW KIAA0812 656 AVAILLHYFFLSTFAWLFVQGLHLYRMQ---VEPRNVDRGAMRFYHALGW 702 GvPavfVgiWaivrpdkagygnegCCWlsnedngyfwWiikGPvllvilv GvPav g++++++p+ gygn+++CW+s +++++W+++GPv+lvi++ KIAA0812 703 GVPAVLLGLAVGLDPE--GYGNPDFCWISV--HEPLIWSFAGPVVLVIVM 748 NfilFinilriLvqKlridslspdmgetdqyrkkrlaKStLlLlPLLGit N +F++ r+ ++ + + ++ ++ ++S++lLl+L+ + KIAA0812 749 NGTMFLLAARTSCSTGQ------REAKKTSAL---TLRSSFLLLLLVSAS 789 wvlflfapeddarGvssivflylflilnSfQGFfVavlYCFLNgEV<-* w+++l+a+++ s +f+yl+++l+ +QG+ V +l+C+LN + KIAA0812 790 WLFGLLAVNH-----SILAFHYLHAGLCGLQGLAVLLLFCVLNADA 830 PF00002.15.ls: domain 1 of 1, from 588 to 830: score 311.9, E = 1e-90 *->lllLkviytVGyslSLvaLllAiaifllFRkLhCtRNyIHlNLfaSf l+lL+v+++V ++S +aL+l+ ai+l +R+L+++ IH N a++ KIAA0812 588 LELLAVFTHVVVAVSVAALVLTAAILLSLRSLKSNVRGIHANVAAAL 634 iLraisflikdavlfnsvglseadqlsweeslhcsasagkitmivvVgCk +++++fl+++++++n+ C+ KIAA0812 635 GVAELLFLLGIHRTHNQLV-----------------------------CT 655 vvavflhYfflaNFfWmLvEGlYLhtLlvvtVevffserkylwwYlliGW +va++lhYffl++F+W++v Gl+L+++ Ve+++ +r+ +++Y+++GW KIAA0812 656 AVAILLHYFFLSTFAWLFVQGLHLYRMQ---VEPRNVDRGAMRFYHALGW 702 GvPavfVgiWaivrpdkagygnegCCWlsnedngyfwWiikGPvllvilv GvPav g++++++p+ gygn+++CW+s +++++W+++GPv+lvi++ KIAA0812 703 GVPAVLLGLAVGLDPE--GYGNPDFCWISV--HEPLIWSFAGPVVLVIVM 748 NfilFinilriLvqKlridslspdmgetdqyrkkrlaKStLlLlPLLGit N +F++ r+ ++ + + ++ ++ ++S++lLl+L+ + KIAA0812 749 NGTMFLLAARTSCSTGQ------REAKKTSAL---TLRSSFLLLLLVSAS 789 wvlflfapeddarGvssivflylflilnSfQGFfVavlYCFLNgEV<-* w+++l+a+++ s +f+yl+++l+ +QG+ V +l+C+LN + KIAA0812 790 WLFGLLAVNH-----SILAFHYLHAGLCGLQGLAVLLLFCVLNADA 830 //