hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-13442738/chunk_1/iprscan-20080502-13442738.nocrc
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Query sequence: KIAA0811
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00112                                                 282.8    2.6e-80   5
SM00181                                                  60.4    2.3e-13   2
SM00179                                                  24.3     0.0016   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00112    1/5       1    76 [.     1   121 []    48.8  7.4e-10
SM00112    2/5     101   179 ..     1   121 []    49.1    6e-10
SM00112    3/5     203   284 ..     1   121 []   110.3  2.2e-28
SM00112    4/5     308   389 ..     1   121 []    69.7  3.5e-16
SM00112    5/5     413   487 ..     1   121 []     5.0     0.77
SM00179    1/2     721   758 ..     1    34 []    13.5    0.035
SM00181    1/2     724   758 ..     1    32 []    29.0  0.00064
SM00179    2/2     761   796 ..     1    34 []    10.8    0.078
SM00181    2/2     763   796 ..     1    32 []    31.4  0.00012

Alignments of top-scoring domains:
SM00112: domain 1 of 5, from 1 to 76: score 48.8, E = 7.4e-10
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils....lFsIdpetGtngps
                            D+g    N++      v+Ys+ ++ +++FsId++tG     
    KIAA0811     1    ------DQG---ANAQ------VVYSLPDsaegHFSIDATTG----- 27   

                   LvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdssp
                         +i++ kpL    q         +  +Ltv+A+D G+p p     
    KIAA0811    28 ------VIRLEKPLQVRPQ---------APLELTVRASDLGTPIP----- 57   

                   trksqqtpplsstatvtvtVlDvNDNaP<-*
                            ls+  tvtv V+   D  P   
    KIAA0811    58 ---------LSTLGTVTVSVVGLEDYLP    76   

SM00112: domain 2 of 5, from 101 to 179: score 49.1, E = 6e-10
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                       + t + ++      k        Y+++s+++++ F++d++tG    
    KIAA0811   101    ATLTRPGAE------K------TGYRVVSgneqgRFRLDARTG---- 131  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          i++++++LD+E+          ++Y L +e + + + +     
    KIAA0811   132 -------ILYVNASLDFETS---------PKYFLSIECSRKSSSS----- 160  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             ls+ +tv v+++DvN+++P   
    KIAA0811   161 ----------LSDVTTVMVNITDVNEHRP    179  

SM00112: domain 3 of 5, from 203 to 284: score 110.3, E = 2.2e-28
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      vsAtD+D +    N++      +tYs++++++ ++F+I+p+ G    
    KIAA0811   203    VSATDEDGP---LNSD------ITYSLIGgnqlgHFTIHPKKG---- 236  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          ++ ++k+LDRE+          s+Y+L+ +AtD+G+pp     
    KIAA0811   237 -------ELQVAKALDREQA---------SSYSLKLRATDSGQPP----- 265  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             l   + + ++V DvNDN+P   
    KIAA0811   266 ----------LHEDTDIAIQVADVNDNPP    284  

SM00112: domain 4 of 5, from 308 to 389: score 69.7, E = 3.5e-16
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils.....lFsIdpetGtngp
                      +  +D+Ds+   eNg p      +++i+ +++++ F++ p++     
    KIAA0811   308    LILSDPDSP---ENGPP-----YSFRITKgnngsAFRVTPDG----- 341  

                   sLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgdss
                          +++t++ L R +q         ++Y+L+++A+D+G pp     
    KIAA0811   342 -------WLVTAEGLSRRAQ---------EWYQLQIQASDSGIPP----- 370  

                   ptrksqqtpplsstatvtvtVlDvNDNaP<-*
                             lss ++v+v+V+ +   aP   
    KIAA0811   371 ----------LSSLTSVHVHVTEQSHYAP    389  

SM00112: domain 5 of 5, from 413 to 487: score 5.0, E = 0.77
                   *->vsAtDaDsgsngeNgkpgdaevvtYsils......lFsIdpetGtng
                      ++AtD+D               +tYs+ ++++ +++Fs+ +  G   
    KIAA0811   413    IHATDRDPQ-----DT------LTYSLAEeetlgrHFSVGAPDG--- 445  

                   psLvkleiiitttkpLDREeqflkreqtdeseYtLtveAtDgGgpppgds
                            i++++ L R             +Y+++v+++Dg        
    KIAA0811   446 --------KIIAAQGLPR------------GHYSFNVTVSDGT------- 468  

                   sptrksqqtpplsstatvtvtVlDvNDNaP<-*
                              +++ta v+v V  v   a    
    KIAA0811   469 -----------FTTTAGVHVYVWHVGQEAL    487  

SM00179: domain 1 of 2, from 721 to 758: score 13.5, E = 0.035
                   *->DiDEC...pCqnGGptgtCiN..vGSYrC.CppGyt.rnCe<-*
                        D C+++ C nGG   +C  ++  +Y C+Cpp +++++Ce   
    KIAA0811   721    HSDYCsqnTCLNGG---KCSWthGAGYVCkCPPQFSgKHCE    758  

SM00181: domain 1 of 2, from 724 to 758: score 29.0, E = 0.00064
                   *->eCa..pCsnGgtEqnGtCi.....sytC.CpgpGytg.rCe<-*
                       C+++ C nG     G+C  +++ +y C+Cp p ++g++Ce   
    KIAA0811   724    YCSqnTCLNG-----GKCSwthgaGYVCkCP-PQFSGkHCE    758  

SM00179: domain 2 of 2, from 761 to 796: score 10.8, E = 0.078
                   *->DiDEC...pCqnGGptgtCiN.vGSYrC.CppGyt.rnCe<-*
                        + C+  pC  GG   tCi ++ + +C+Cp  yt+ +Ce   
    KIAA0811   761    REN-CtfaPCLEGG---TCILsPKGASCnCPHPYTgDRCE    796  

SM00181: domain 2 of 2, from 763 to 796: score 31.4, E = 0.00012
                   *->eCa..pCsnGgtEqnGtCi....sytC.CpgpGytg.rCe<-*
                       C   pC +G     GtCi ++++ +C+Cp + ytg+rCe   
    KIAA0811   763    NCTfaPCLEG-----GTCIlspkGASCnCP-HPYTGdRCE    796  

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