hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13442738/chunk_1/iprscan-20080502-13442738.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0811 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00028.8.fs Cadherin domain 292.3 8.5e-85 5 PF00028.8.ls Cadherin domain 267.2 3e-77 5 PF00008.17.ls EGF-like domain 63.9 4.8e-16 2 PF00008.17.fs EGF-like domain 60.3 5.3e-16 2 PF07974.3.ls EGF-like domain 28.9 1.7e-05 2 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00028.8.fs 1/5 1 69 [. 24 107 .] 36.4 8.1e-10 PF00028.8.ls 1/5 1 69 [. 1 107 [] 4.0 0.064 PF00028.8.ls 2/5 83 172 .. 1 107 [] 55.7 1.4e-13 PF00028.8.fs 2/5 83 172 .. 1 107 [] 53.9 7.8e-15 PF00028.8.ls 3/5 186 277 .. 1 107 [] 102.7 9.9e-28 PF00028.8.fs 3/5 186 277 .. 1 107 [] 100.9 2.6e-28 PF00028.8.ls 4/5 291 382 .. 1 107 [] 79.2 1.2e-20 PF00028.8.fs 4/5 291 382 .. 1 107 [] 77.4 1.4e-21 PF00028.8.ls 5/5 396 480 .. 1 107 [] 25.5 0.00017 PF00028.8.fs 5/5 396 480 .. 1 107 [] 23.7 3.4e-06 PF00008.17.fs 1/2 725 757 .. 1 38 [] 29.7 2.1e-07 PF00008.17.ls 1/2 725 757 .. 1 38 [] 31.5 2.8e-06 PF00008.17.fs 2/2 764 795 .. 1 38 [] 30.6 1.1e-07 PF00008.17.ls 2/2 764 795 .. 1 38 [] 32.4 1.5e-06 Alignments of top-scoring domains: PF00028.8.fs: domain 1 of 5, from 1 to 69: score 36.4, E = 8.1e-10 *->DdPlgpNgrirYsilggnpggwFrIdpdtGdnegiisttkpLDREei D +g+N++++Ys+ +g+F+Id tG+ i++ kpL + KIAA0811 1 D--QGANAQVVYSLPDSA-EGHFSIDATTGV----IRLEKPLQVRPQ 40 fngeYeLtveAtDadpllasgggpplsstatvtitVl<-* eLtv+A+D g + pls+ +tvt++V KIAA0811 41 --APLELTVRASDL------GTPIPLSTLGTVTVSVV 69 PF00028.8.ls: domain 1 of 5, from 1 to 69: score 4.0, E = 0.064 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr D +g+N++++Ys+ +g+F+ KIAA0811 1 -----------------------D--QGANAQVVYSLPDSA-EGHFS 21 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls Id tG+ i++ kpL + eLtv+A+D g + pls KIAA0811 22 IDATTGV----IRLEKPLQVRPQ--APLELTVRASDL------GTPIPLS 59 statvtitVl<-* + +tvt++V KIAA0811 60 TLGTVTVSVV 69 PF00028.8.ls: domain 2 of 5, from 83 to 172: score 55.7, E = 1.4e-13 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s++vpE+ap+Gtevl+++ +++ ++ Y+ ++gn+ g Fr KIAA0811 83 HSVQVPEDAPPGTEVLQLAT----LTRPGAEKTGYRVVSGNEQGRFR 125 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +d +tG +++ ++LD E+ ++Y L++e++ + +ls KIAA0811 126 LDARTGI----LYVNASLDFETS--PKYFLSIECSRK-------SSSSLS 162 statvtitVl<-* +++tv ++++ KIAA0811 163 DVTTVMVNIT 172 PF00028.8.fs: domain 2 of 5, from 83 to 172: score 53.9, E = 7.8e-15 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr s++vpE+ap+Gtevl+++ +++ ++ Y+ ++gn+ g Fr KIAA0811 83 HSVQVPEDAPPGTEVLQLAT----LTRPGAEKTGYRVVSGNEQGRFR 125 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls +d +tG +++ ++LD E+ ++Y L++e++ + +ls KIAA0811 126 LDARTGI----LYVNASLDFETS--PKYFLSIECSRK-------SSSSLS 162 statvtitVl<-* +++tv ++++ KIAA0811 163 DVTTVMVNIT 172 PF00028.8.ls: domain 3 of 5, from 186 to 277: score 102.7, E = 9.9e-28 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ys +v Ena vG +ltv AtD D ++N+ i+Ys++ggn g+F+ KIAA0811 186 YSTRVLENALVGDVILTVSATDED--GPLNSDITYSLIGGNQLGHFT 230 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls I+p+ G+ + ++k LDRE+ + Y+L ++AtD+ g+ppl KIAA0811 231 IHPKKGE----LQVAKALDREQA--SSYSLKLRATDS-------GQPPLH 267 statvtitVl<-* + + i+V KIAA0811 268 EDTDIAIQVA 277 PF00028.8.fs: domain 3 of 5, from 186 to 277: score 100.9, E = 2.6e-28 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnpggwFr ys +v Ena vG +ltv AtD D ++N+ i+Ys++ggn g+F+ KIAA0811 186 YSTRVLENALVGDVILTVSATDED--GPLNSDITYSLIGGNQLGHFT 230 IdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppls I+p+ G+ + ++k LDRE+ + Y+L ++AtD+ g+ppl KIAA0811 231 IHPKKGE----LQVAKALDREQA--SSYSLKLRATDS-------GQPPLH 267 statvtitVl<-* + + i+V KIAA0811 268 EDTDIAIQVA 277 PF00028.8.ls: domain 4 of 5, from 291 to 382: score 79.2, E = 1.2e-20 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrir.YsilggnpggwF ys +v En+p+G++vl++ +D+D ++ Ng +++++i++gn g F KIAA0811 291 YSTTVQENSPIGSKVLQLILSDPD--SPENGPPYsFRITKGNNGSAF 335 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl r++p +G+ + t++ L R ++ ++Y L + A+D+ g ppl KIAA0811 336 RVTP-DGW----LVTAEGLSRRAQ--EWYQLQIQASDS-------GIPPL 371 sstatvtitVl<-* ss ++v+++V+ KIAA0811 372 SSLTSVHVHVT 382 PF00028.8.fs: domain 4 of 5, from 291 to 382: score 77.4, E = 1.4e-21 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrir.YsilggnpggwF ys +v En+p+G++vl++ +D+D ++ Ng +++++i++gn g F KIAA0811 291 YSTTVQENSPIGSKVLQLILSDPD--SPENGPPYsFRITKGNNGSAF 335 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl r++p +G+ + t++ L R ++ ++Y L + A+D+ g ppl KIAA0811 336 RVTP-DGW----LVTAEGLSRRAQ--EWYQLQIQASDS-------GIPPL 371 sstatvtitVl<-* ss ++v+++V+ KIAA0811 372 SSLTSVHVHVT 382 PF00028.8.ls: domain 5 of 5, from 396 to 480: score 25.5, E = 0.00017 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.ggwF ++v E++ G +v+ ++AtD+D p ++Ys+ + + g++F KIAA0811 396 IFITVGEDEFQGGMVGKIHATDRD----PQDTLTYSLAEEETlGRHF 438 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl ++ +G i ++ L R g Y+++v ++D+ KIAA0811 439 SVGAPDGK----IIAAQGLPR-----GHYSFNVTVSDG----------TF 469 sstatvtitVl<-* ++ta v++ V KIAA0811 470 TTTAGVHVYVW 480 PF00028.8.fs: domain 5 of 5, from 396 to 480: score 23.7, E = 3.4e-06 *->ysasvpEnapvGtevltvtAtDaDdPlgpNgrirYsilggnp.ggwF ++v E++ G +v+ ++AtD+D p ++Ys+ + + g++F KIAA0811 396 IFITVGEDEFQGGMVGKIHATDRD----PQDTLTYSLAEEETlGRHF 438 rIdpdtGdnegiisttkpLDREeifngeYeLtveAtDadpllasgggppl ++ +G i ++ L R g Y+++v ++D+ KIAA0811 439 SVGAPDGK----IIAAQGLPR-----GHYSFNVTVSDG----------TF 469 sstatvtitVl<-* ++ta v++ V KIAA0811 470 TTTAGVHVYVW 480 PF00008.17.fs: domain 1 of 2, from 725 to 757: score 29.7, E = 2.1e-07 *->CspnngpCsngGtCvdtp.ggytCeCppGyfllytGkrC<-* Cs+n C+ngG+C t + gy C+Cpp ++Gk+C KIAA0811 725 CSQN--TCLNGGKCSWTHgAGYVCKCPPQ----FSGKHC 757 PF00008.17.ls: domain 1 of 2, from 725 to 757: score 31.5, E = 2.8e-06 *->CspnngpCsngGtCvdtp.ggytCeCppGyfllytGkrC<-* Cs+n C+ngG+C t + gy C+Cpp ++Gk+C KIAA0811 725 CSQN--TCLNGGKCSWTHgAGYVCKCPPQ----FSGKHC 757 PF00008.17.fs: domain 2 of 2, from 764 to 795: score 30.6, E = 1.1e-07 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+ pC+ gGtC+ +p g +C Cp++ ytG+rC KIAA0811 764 CTFA--PCLEGGTCILSPKGASCNCPHP----YTGDRC 795 PF00008.17.ls: domain 2 of 2, from 764 to 795: score 32.4, E = 1.5e-06 *->CspnngpCsngGtCvdtpggytCeCppGyfllytGkrC<-* C+ pC+ gGtC+ +p g +C Cp++ ytG+rC KIAA0811 764 CTFA--PCLEGGTCILSPKGASCNCPHP----YTGDRC 795 //