hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-13213380/chunk_1/iprscan-20080502-13213380.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0798 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00096.16.ls Zinc finger, C2H2 type 502.8 3.5e-148 16 PF00096.16.fs Zinc finger, C2H2 type 476.9 2.3e-140 17 PF01352.17.fs KRAB box 87.3 3.8e-24 1 PF01352.17.ls KRAB box 89.2 1.1e-23 1 PF01286.9.fs XPA protein N-terminal 75.6 8.3e-21 14 PF03604.4.fs DNA directed RNA polymerase, 7 kDa sub 45.3 5.1e-11 11 PF01096.9.fs Transcription factor S-II (TFIIS) 30.8 7.8e-09 13 PF07754.2.fs Domain of unknown function (DUF1610) 36.0 1.3e-08 12 PF08792.1.fs A2L zinc ribbon domain 29.4 9e-07 11 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01352.17.fs 1/1 38 78 .. 1 41 [] 87.3 3.8e-24 PF01352.17.ls 1/1 38 78 .. 1 41 [] 89.2 1.1e-23 PF00096.16.ls 1/16 235 257 .. 1 24 [] 32.7 1.2e-06 PF00096.16.fs 2/17 235 257 .. 1 24 [] 30.7 2.1e-06 PF00096.16.ls 2/16 263 285 .. 1 24 [] 28.8 1.8e-05 PF00096.16.fs 3/17 263 285 .. 1 24 [] 26.8 2e-05 PF00096.16.ls 3/16 291 313 .. 1 24 [] 34.3 4e-07 PF00096.16.fs 4/17 291 313 .. 1 24 [] 32.3 8.5e-07 PF00096.16.fs 5/17 319 341 .. 1 24 [] 28.2 8.8e-06 PF00096.16.ls 4/16 319 341 .. 1 24 [] 30.2 6.8e-06 PF00096.16.ls 5/16 347 369 .. 1 24 [] 33.9 5.2e-07 PF00096.16.fs 6/17 347 369 .. 1 24 [] 31.9 1e-06 PF00096.16.ls 6/16 375 397 .. 1 24 [] 29.7 9.3e-06 PF00096.16.fs 7/17 375 397 .. 1 24 [] 27.8 1.1e-05 PF00096.16.ls 7/16 403 425 .. 1 24 [] 30.7 4.8e-06 PF00096.16.fs 8/17 403 425 .. 1 24 [] 28.7 6.6e-06 PF00096.16.ls 8/16 431 453 .. 1 24 [] 36.7 7.6e-08 PF00096.16.fs 9/17 431 453 .. 1 24 [] 34.7 2.1e-07 PF00096.16.ls 9/16 459 481 .. 1 24 [] 31.8 2.2e-06 PF00096.16.fs 10/17 459 481 .. 1 24 [] 29.8 3.5e-06 PF00096.16.fs 11/17 487 509 .. 1 24 [] 29.6 4e-06 PF00096.16.ls 10/16 487 509 .. 1 24 [] 31.6 2.6e-06 PF00096.16.ls 11/16 515 537 .. 1 24 [] 31.9 2.1e-06 PF00096.16.fs 12/17 515 537 .. 1 24 [] 29.9 3.3e-06 PF00096.16.ls 12/16 543 565 .. 1 24 [] 35.2 2.1e-07 PF00096.16.fs 13/17 543 565 .. 1 24 [] 33.2 4.9e-07 PF00096.16.fs 14/17 571 593 .. 1 24 [] 27.3 1.5e-05 PF00096.16.ls 13/16 571 593 .. 1 24 [] 29.3 1.3e-05 PF00096.16.ls 14/16 599 621 .. 1 24 [] 20.9 0.0043 PF00096.16.ls 15/16 627 649 .. 1 24 [] 30.8 4.5e-06 PF00096.16.fs 16/17 627 649 .. 1 24 [] 28.8 6.3e-06 PF00096.16.fs 17/17 655 677 .. 1 24 [] 32.7 6.8e-07 PF00096.16.ls 16/16 655 677 .. 1 24 [] 34.7 3.1e-07 Alignments of top-scoring domains: PF01352.17.fs: domain 1 of 1, from 38 to 78: score 87.3, E = 3.8e-24 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +t eDV+V+Ft+EEW+lL+p Q++LYrdVMlE ysnL+S+g KIAA0798 38 LTLEDVTVEFTWEEWQLLGPFQKDLYRDVMLEIYSNLLSMG 78 PF01352.17.ls: domain 1 of 1, from 38 to 78: score 89.2, E = 1.1e-23 *->VtFeDVaVdFtqEEWelLdpaQrnLYrdVMlENysnLvSlg<-* +t eDV+V+Ft+EEW+lL+p Q++LYrdVMlE ysnL+S+g KIAA0798 38 LTLEDVTVEFTWEEWQLLGPFQKDLYRDVMLEIYSNLLSMG 78 PF00096.16.ls: domain 1 of 16, from 235 to 257: score 32.7, E = 1.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F ks+L+ H r+H KIAA0798 235 HVCS-ECGKAFVKKSQLTDHERVH 257 PF00096.16.fs: domain 2 of 17, from 235 to 257: score 30.7, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk+F ks+L+ H r+H KIAA0798 235 HVCS-ECGKAFVKKSQLTDHERVH 257 PF00096.16.ls: domain 2 of 16, from 263 to 285: score 28.8, E = 1.8e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C k+Fsrks L+ H+r+H KIAA0798 263 YGCT-LCAKVFSRKSRLNEHQRIH 285 PF00096.16.fs: domain 3 of 17, from 263 to 285: score 26.8, E = 2e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ C k+Fsrks L+ H+r+H KIAA0798 263 YGCT-LCAKVFSRKSRLNEHQRIH 285 PF00096.16.ls: domain 3 of 16, from 291 to 313: score 34.3, E = 4e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+F+ ks L H+rtH KIAA0798 291 FICS-ECGKVFTMKSRLIEHQRTH 313 PF00096.16.fs: domain 4 of 17, from 291 to 313: score 32.3, E = 8.5e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cgk+F+ ks L H+rtH KIAA0798 291 FICS-ECGKVFTMKSRLIEHQRTH 313 PF00096.16.fs: domain 5 of 17, from 319 to 341: score 28.2, E = 8.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F k nL H+r H KIAA0798 319 YICN-ECGKGFPGKRNLIVHQRNH 341 PF00096.16.ls: domain 4 of 16, from 319 to 341: score 30.2, E = 6.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F k nL H+r H KIAA0798 319 YICN-ECGKGFPGKRNLIVHQRNH 341 PF00096.16.ls: domain 5 of 16, from 347 to 369: score 33.9, E = 5.2e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ ks L H+rtH KIAA0798 347 YICS-ECGKGFTGKSMLIIHQRTH 369 PF00096.16.fs: domain 6 of 17, from 347 to 369: score 31.9, E = 1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ ks L H+rtH KIAA0798 347 YICS-ECGKGFTGKSMLIIHQRTH 369 PF00096.16.ls: domain 6 of 16, from 375 to 397: score 29.7, E = 9.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F++k+ H+r H KIAA0798 375 YICS-ECGKGFTTKHYVIIHQRNH 397 PF00096.16.fs: domain 7 of 17, from 375 to 397: score 27.8, E = 1.1e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F++k+ H+r H KIAA0798 375 YICS-ECGKGFTTKHYVIIHQRNH 397 PF00096.16.ls: domain 7 of 16, from 403 to 425: score 30.7, E = 4.8e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ ks + H+rtH KIAA0798 403 YICN-ECGKGFTMKSRMIEHQRTH 425 PF00096.16.fs: domain 8 of 17, from 403 to 425: score 28.7, E = 6.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ ks + H+rtH KIAA0798 403 YICN-ECGKGFTMKSRMIEHQRTH 425 PF00096.16.ls: domain 8 of 16, from 431 to 453: score 36.7, E = 7.6e-08 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F rksnL H+r H KIAA0798 431 YICS-ECGKGFPRKSNLIVHQRNH 453 PF00096.16.fs: domain 9 of 17, from 431 to 453: score 34.7, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F rksnL H+r H KIAA0798 431 YICS-ECGKGFPRKSNLIVHQRNH 453 PF00096.16.ls: domain 9 of 16, from 459 to 481: score 31.8, E = 2.2e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ ks L H+rtH KIAA0798 459 YLCS-ECGKGFTVKSMLIIHQRTH 481 PF00096.16.fs: domain 10 of 17, from 459 to 481: score 29.8, E = 3.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ ks L H+rtH KIAA0798 459 YLCS-ECGKGFTVKSMLIIHQRTH 481 PF00096.16.fs: domain 11 of 17, from 487 to 509: score 29.6, E = 4e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ks L H+rtH KIAA0798 487 YTCS-ECGKGFPLKSRLIVHQRTH 509 PF00096.16.ls: domain 10 of 16, from 487 to 509: score 31.6, E = 2.6e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F ks L H+rtH KIAA0798 487 YTCS-ECGKGFPLKSRLIVHQRTH 509 PF00096.16.ls: domain 11 of 16, from 515 to 537: score 31.9, E = 2.1e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F +s L H+rtH KIAA0798 515 YRCS-ECGKGFIVNSGLMLHQRTH 537 PF00096.16.fs: domain 12 of 17, from 515 to 537: score 29.9, E = 3.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y+C+ +Cgk F +s L H+rtH KIAA0798 515 YRCS-ECGKGFIVNSGLMLHQRTH 537 PF00096.16.ls: domain 12 of 16, from 543 to 565: score 35.2, E = 2.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F ksnL H+rtH KIAA0798 543 YICN-ECGKGFAFKSNLVVHQRTH 565 PF00096.16.fs: domain 13 of 17, from 543 to 565: score 33.2, E = 4.9e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F ksnL H+rtH KIAA0798 543 YICN-ECGKGFAFKSNLVVHQRTH 565 PF00096.16.fs: domain 14 of 17, from 571 to 593: score 27.3, E = 1.5e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk F+ k L H+++H KIAA0798 571 FMCS-ECGKGFTMKRYLIVHQQIH 593 PF00096.16.ls: domain 13 of 16, from 571 to 593: score 29.3, E = 1.3e-05 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +Cgk F+ k L H+++H KIAA0798 571 FMCS-ECGKGFTMKRYLIVHQQIH 593 PF00096.16.ls: domain 14 of 16, from 599 to 621: score 20.9, E = 0.0043 *->ykCpfdCgksFsrksnLkrHlrtH<-* + C+ +Cg+ F +L H+++H KIAA0798 599 CICS-ECGRGFAKETELALHKQVH 621 PF00096.16.ls: domain 15 of 16, from 627 to 649: score 30.8, E = 4.5e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ ks L H+rtH KIAA0798 627 YGCN-ECGKGFTMKSRLIVHQRTH 649 PF00096.16.fs: domain 16 of 17, from 627 to 649: score 28.8, E = 6.3e-06 *->ykCpfdCgksFsrksnLkrHlrtH<-* y C+ +Cgk F+ ks L H+rtH KIAA0798 627 YGCN-ECGKGFTMKSRLIVHQRTH 649 PF00096.16.fs: domain 17 of 17, from 655 to 677: score 32.7, E = 6.8e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+Fs+k nL H+rtH KIAA0798 655 FVCS-ECRKAFSSKRNLIVHQRTH 677 PF00096.16.ls: domain 16 of 16, from 655 to 677: score 34.7, E = 3.1e-07 *->ykCpfdCgksFsrksnLkrHlrtH<-* ++C+ +C k+Fs+k nL H+rtH KIAA0798 655 FVCS-ECRKAFSSKRNLIVHQRTH 677 //