# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk05482.fasta.huge -Q ../query/KIAA0785.ptfa ./tmplib.23663 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA0785, 706 aa
 vs ./tmplib.23663 library

1986799 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 5.1963+/-0.00495; mu= 13.4454+/- 0.338
 mean_var=84.3577+/-20.199, 0's: 0 Z-trim: 2  B-trim: 154 in 1/39
 Lambda= 0.139641

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 38, opt: 26, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA0637  ( 1175 res)   hj03305                    (1175)  503 111.7   4e-25


>>KIAA0637  ( 1175 res)   hj03305                         (1175 aa)
 initn: 402 init1: 136 opt: 503  Z-score: 543.0  bits: 111.7 E(): 4e-25
Smith-Waterman score: 556;  25.039% identity (56.569% similar) in 647 aa overlap (32-662:562-1167)

              10        20        30        40        50        60 
KIAA07 AVQQAGSGGEAMENKSLESSQTDLKLVAHPRAKSKVWKYFGFDTNAEGCILQWKKIYCRI
                                     .  ::.:..:..      :  .  :. :  
KIAA06 LASAESSSSKLTDLPTVVTKNNQVMFPVNSKKTSKLWNHFSI------CSADSTKVVCLH
             540       550       560       570             580     

              70        80        90       100       110       120 
KIAA07 CMAQIAYSGNTSNLSYHLEKNHPEEFCEFVKSNTEQMREAFATAFSKLKPESSQQPGQDA
       :   :. . . .::.      : ..:   : . ::  . :  .. .   :....  : ..
KIAA06 CGRTISRGKKPTNLGTSCLLRHLQRFHSNVLK-TEVSETARPSSPDTRVPRGTELSGASS
         590       600       610        620       630       640    

             130        140       150       160       170       180
KIAA07 LAVKAGHGYDSKK-QQELTAAVLGLICEGLYPASIVDEPTFKVLLKTADPRYELPSRKYI
       .     . :::.   ...:. .  .:   : : :.::.  :. ::.   :.: ::. .:.
KIAA06 FDDTNEKFYDSHPVAKKITSLIAEMIALDLQPYSFVDNVGFNRLLEYLKPQYSLPAPSYF
          650       660       670       680       690       700    

              190       200          210       220       230       
KIAA07 STKAIPEKYGAVREVILKELAEATWCGI---STDMWRSENQNRAYVTLAAHFLGLGAPN-
       :  :::  :  :...:...: ::   :.   .. .: : ::.: :.::.::.... .:  
KIAA06 SRTAIPGMYDNVKQIIMSHLKEAE-SGVIHFTSGIWMS-NQTREYLTLTAHWVSFESPAR
          710       720        730       740        750       760  

          240        250       260       270        280       290  
KIAA07 --CLSMG-SRCLKTFEVPEENTAETITRVLYEVFIEWGISAKV-FGATTNYGKDIVKACS
         : .   :  : . .:  . ....: . :   .  :  :. .  : :.. . .: :.  
KIAA06 PRCDDHHCSALLDVSQVDCDYSGNSIQKQLECWWEAWVTSTGLQVGITVTDNASIGKT--
            770       780       790       800       810       820  

              300       310       320        330       340         
KIAA07 LLDVAVH--MPCLGHTFNAGIQQAFQLPKL-GALLSRCRKLVEYFQQSAVAMYMLYEKQK
        :. . :  . :..:: :  ...:..  ..   :::  ::. :  ..:  :   : : :.
KIAA06 -LNEGEHSSVQCFSHTVNLIVSEAIKSQRMVQNLLSLARKICERVHRSPKAKEKLAELQR
               830       840       850       860       870         

     350       360       370       380       390       400         
KIAA07 QQNVAHCMLVSNRVSWWGSTLAMLQRLKEQQFVIAGVLVEDSNNHHLMLEASEWATIEGL
       .  . .  :...  : :.... ::.:: ::. .:  . ::   : . ..  ..: .....
KIAA06 EYALPQHHLIQDVPSKWSTSFHMLERLIEQKRAINEMSVE--CNFRELISCDQWEVMQSV
     880       890       900       910         920       930       

     410       420       430       440        450          460     
KIAA07 VELLQPFKQVAEMLSASRYPTISMVKPLLHML-LNTTLNIKET---DSKELSMAKEVIAK
        . :.::. ... .: ... :.:.: :..:.:  .. . ..::   :.   :. ::....
KIAA06 CRALKPFEAASREMS-TQMSTLSQVIPMVHILNRKVEMLFEETMGIDTMLRSL-KEAMVS
       940       950        960       970       980        990     

         470       480       490       500       510       520     
KIAA07 ELSKTYQETPEIDMFLNVATFLDPRYKRLPFLSAFERQQVENRVVEEAKGLLDKVKDGGY
       .:: : .. :.  .:   ::.::::::   ...  : .: .. ...: . :.....    
KIAA06 RLSATLHD-PRY-VF---ATLLDPRYKA-SLFTEEEAEQYKQDLIRELE-LMNSTS----
        1000           1010       1020      1030       1040        

         530       540       550       560       570       580     
KIAA07 RPAEDKIFPVPEEPPVKKLMRTSTPPPASVINNMLAEIFCQTGGVEDQEEWHAQVVEELS
                  :.  ...   ...:   :. .. :  .  ..   . .:.    .:    
KIAA06 -----------EDVAASHRCDAGSPSKDSAAEENLWSLVAKVKKKDPREKLPEAMVLA--
                    1050      1060      1070      1080      1090   

         590       600       610       620       630       640     
KIAA07 NFKSQKVLGLNEDPLKWWSDRLALFPLLPKVLQKYWCVTATRVAPERLFGSAANVVSAKR
        .  ..::  . ::: .:. . : .: :  .  ..     . :  :.::.. ..  :  .
KIAA06 -YLEEEVLEHSCDPLTYWNLKKASWPGLSALAVRFLGCPPSIVPSEKLFNTPTENGSLGQ
             1100      1110      1120      1130      1140      1150

         650       660       670       680       690       700     
KIAA07 NRLAPAHVDEQVFLYENARSGAEAEPEDQDEGEWGLDQEQVFSLGDGVSGGFFGIRDSSF
       .::   : .. .::  :                                           
KIAA06 SRLMMEHFEKLIFLKVNLPLIYFQY                                   
             1160      1170                                        




706 residues in 1 query   sequences
1986799 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:15:54 2008 done: Thu Dec 18 15:15:55 2008
 Total Scan time:  0.550 Total Display time:  0.030

Function used was FASTA [version 34.26.5 April 26, 2007]