hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12303328/chunk_1/iprscan-20080502-12303328.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0768 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02354.7.fs Latrophilin Cytoplasmic C-terminal region 829.7 1.5e-246 2 PF02354.7.ls Latrophilin Cytoplasmic C-terminal region 805.5 2.7e-239 1 PF00002.15.ls 7 transmembrane receptor (Secretin family 407.0 2.5e-119 1 PF00002.15.fs 7 transmembrane receptor (Secretin family 405.0 9.8e-119 1 PF01825.11.fs Latrophilin/CL-1-like GPS domain 87.5 2.9e-25 1 PF01825.11.ls Latrophilin/CL-1-like GPS domain 89.5 9.7e-24 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF01825.11.fs 1/1 226 273 .. 1 48 [] 87.5 2.9e-25 PF01825.11.ls 1/1 226 273 .. 1 48 [] 89.5 9.7e-24 PF00002.15.ls 1/1 286 533 .. 1 293 [] 407.0 2.5e-119 PF00002.15.fs 1/1 286 533 .. 1 293 [] 405.0 9.8e-119 PF02354.7.fs 1/2 542 606 .. 1 73 [. 154.8 9.9e-45 PF02354.7.ls 1/1 542 872 .] 1 404 [] 805.5 2.7e-239 PF02354.7.fs 2/2 610 872 .] 126 404 .] 674.8 5.9e-200 Alignments of top-scoring domains: PF01825.11.fs: domain 1 of 1, from 226 to 273: score 87.5, E = 2.9e-25 *->snptCvfWdese.ggqGgWstdGCqlgvssndthttClCnHLTsFAv +np C fW++s++++ G Wst+GC+l + +n thttC+CnHLT+FAv KIAA0768 226 FNPNCSFWSYSKrTMTGYWSTQGCRL-LTTNKTHTTCSCNHLTNFAV 271 Lm<-* Lm KIAA0768 272 LM 273 PF01825.11.ls: domain 1 of 1, from 226 to 273: score 89.5, E = 9.7e-24 *->snptCvfWdese.ggqGgWstdGCqlgvssndthttClCnHLTsFAv +np C fW++s++++ G Wst+GC+l + +n thttC+CnHLT+FAv KIAA0768 226 FNPNCSFWSYSKrTMTGYWSTQGCRL-LTTNKTHTTCSCNHLTNFAV 271 Lm<-* Lm KIAA0768 272 LM 273 PF00002.15.ls: domain 1 of 1, from 286 to 533: score 407.0, E = 2.5e-119 *->lllLkviytVGyslSLvaLllAiaifllFRkLhCtRNyIHlNLfaSf +llL vi++VG+ lSLv+Ll++i++f++FR L+++RN+IH+NL++S+ KIAA0768 286 DLLLDVITWVGILLSLVCLLICIFTFCFFRGLQSDRNTIHKNLCISL 332 iLraisflikdavlfnsvglseadqlsweeslhcsasagkitmivvVgCk ++++++fli++++++++++ C KIAA0768 333 FVAELLFLIGINRTDQPIA-----------------------------CA 353 vvavflhYfflaNFfWmLvEGlYLhtLlvvtVevffserkylwwYlliGW v+a++lh+ffla+F+Wm++EG++L+ +l Vevf+se++++++++l+G+ KIAA0768 354 VFAALLHFFFLAAFTWMFLEGVQLYIML---VEVFESEHSRRKYFYLVGY 400 GvPavfVgiWaivrpdkagygnegCCWlsnedngyfwWiikGPvllvilv G+Pa++V+++a+v+++ +yg+++ CWl++ ++yf+W++ GP++l+i++ KIAA0768 401 GMPALIVAVSAAVDYR--SYGTDKVCWLRL--DTYFIWSFIGPATLIIML 446 NfilFinilriLvqKlridslspdmgetdqyrkkrlaKStLlLlPLLGit N+i++ + l ++ +++ +l+p+ g++d+++ ++++++++Ll+LLG+t KIAA0768 447 NVIFLGIALYKMFHHTA--ILKPESGCLDNIK--SWVIGAIALLCLLGLT 492 wvlflfapeddarGvssivflylflilnSfQGFfVavlYCFLNgEV<-* w ++l+ +++ s+++++ylf+i+nS+QG+f+++++C+L+++V KIAA0768 493 WAFGLMYINE-----STVIMAYLFTIFNSLQGMFIFIFHCVLQKKV 533 PF00002.15.fs: domain 1 of 1, from 286 to 533: score 405.0, E = 9.8e-119 *->lllLkviytVGyslSLvaLllAiaifllFRkLhCtRNyIHlNLfaSf +llL vi++VG+ lSLv+Ll++i++f++FR L+++RN+IH+NL++S+ KIAA0768 286 DLLLDVITWVGILLSLVCLLICIFTFCFFRGLQSDRNTIHKNLCISL 332 iLraisflikdavlfnsvglseadqlsweeslhcsasagkitmivvVgCk ++++++fli++++++++++ C KIAA0768 333 FVAELLFLIGINRTDQPIA-----------------------------CA 353 vvavflhYfflaNFfWmLvEGlYLhtLlvvtVevffserkylwwYlliGW v+a++lh+ffla+F+Wm++EG++L+ +l Vevf+se++++++++l+G+ KIAA0768 354 VFAALLHFFFLAAFTWMFLEGVQLYIML---VEVFESEHSRRKYFYLVGY 400 GvPavfVgiWaivrpdkagygnegCCWlsnedngyfwWiikGPvllvilv G+Pa++V+++a+v+++ +yg+++ CWl++ ++yf+W++ GP++l+i++ KIAA0768 401 GMPALIVAVSAAVDYR--SYGTDKVCWLRL--DTYFIWSFIGPATLIIML 446 NfilFinilriLvqKlridslspdmgetdqyrkkrlaKStLlLlPLLGit N+i++ + l ++ +++ +l+p+ g++d+++ ++++++++Ll+LLG+t KIAA0768 447 NVIFLGIALYKMFHHTA--ILKPESGCLDNIK--SWVIGAIALLCLLGLT 492 wvlflfapeddarGvssivflylflilnSfQGFfVavlYCFLNgEV<-* w ++l+ +++ s+++++ylf+i+nS+QG+f+++++C+L+++V KIAA0768 493 WAFGLMYINE-----STVIMAYLFTIFNSLQGMFIFIFHCVLQKKV 533 PF02354.7.fs: domain 1 of 2, from 542 to 606: score 154.8, E = 9.9e-45 *->hihccSllPrgsPrSalkeSskdsgkrsgSgdPlryslGsqSRIRRM ++hccS g +S+ eSs++sgk+sgS++P+rys+GsqSRIRRM KIAA0768 542 RTHCCS----G--KST--ESSIGSGKTSGSRTPGRYSTGSQSRIRRM 580 WNDTVRKQsESSFiaGDINStatLNr<-* WNDTVRKQsESSFi+GDINS+a+LNr KIAA0768 581 WNDTVRKQSESSFITGDINSSASLNR 606 PF02354.7.ls: domain 1 of 1, from 542 to 872: score 805.5, E = 2.7e-239 *->hihccSllPrgsPrSalkeSskdsgkrsgSgdPlryslGsqSRIRRM ++hccS g +S+ eSs++sgk+sgS++P+rys+GsqSRIRRM KIAA0768 542 RTHCCS----G--KST--ESSIGSGKTSGSRTPGRYSTGSQSRIRRM 580 WNDTVRKQsESSFiaGDINStatLNrGamgNhLLtNplLrPhGtnnPYNT WNDTVRKQsESSFi+GDINS+a+LNr KIAA0768 581 WNDTVRKQSESSFITGDINSSASLNR------------------------ 606 LLAEsvvcNapSapvFNspgsllePKHsLnnaRdtSaMDTLPLNGNFnNS ++ll+ naRdtS+MDTLPLNGN++NS KIAA0768 607 -------------------EGLLN------NARDTSVMDTLPLNGNHGNS 631 YSLrsGdYhlsdGvqvvDRGlnlndAtAfEKmIisELvhNYiPSYLNlrg YS++sG+Y ls++vq++DRG+n+n+ tA+EK+I++EL++NYiPSYLN+++ KIAA0768 632 YSIASGEY-LSNCVQIIDRGYNHNE-TALEKKILKELTSNYIPSYLNNHE 679 rSseakrlelekpVkpvigGssSEDdAivlDdAslFnHedslgLELlhke rSse++r++++k+V+++++ + EDdAivlDdA++FnHe+slgLEL+h+e KIAA0768 680 RSSEQNRNLMNKLVNNLGS--GREDDAIVLDDATSFNHEESLGLELIHEE 727 leaPLLppRvySvENHqLYqsdRRRiPkKvKPdeseSfvaeltaeadedl ++aPLLppRvyS+ENHq ++++RRRiP+ d+seSf+++lt+e++edl KIAA0768 728 SDAPLLPPRVYSTENHQPHHYTRRRIPQ----DHSESFFPLLTNEHTEDL 773 qSPnRDSLYtSmpnLrDsPsypesspetqaEdLsPpppAkcGdeeDiYYk qSP+RDSLYtSmp L+++ ++++++tq+E pppAkcGd+eD+YYk KIAA0768 774 QSPHRDSLYTSMPTLAGVAATESVTTSTQTE----PPPAKCGDAEDVYYK 819 SmPPnLgARnHvHqLqtYYQvsRGssdGYivppnkeGtiPeGSSdvREGq Sm PnLg+RnHvHqL+tYYQ++RGssdG+ivppnk+Gt+PeGSS+ G+ KIAA0768 820 SM-PNLGSRNHVHQLHTYYQLGRGSSDGFIVPPNKDGTPPEGSSK---GP 865 mqLVTSL<-* ++LVTSL KIAA0768 866 AHLVTSL 872 PF02354.7.fs: domain 2 of 2, from 610 to 872: score 674.8, E = 5.9e-200 *->LnnaRdtSaMDTLPLNGNFnNSYSLrsGdYhlsdGvqvvDRGlnlnd LnnaRdtS+MDTLPLNGN++NSYS++sG+Y ls++vq++DRG+n+n+ KIAA0768 610 LNNARDTSVMDTLPLNGNHGNSYSIASGEY-LSNCVQIIDRGYNHNE 655 AtAfEKmIisELvhNYiPSYLNlrgrSseakrlelekpVkpvigGssSED tA+EK+I++EL++NYiPSYLN+++rSse++r++++k+V+++++ + ED KIAA0768 656 -TALEKKILKELTSNYIPSYLNNHERSSEQNRNLMNKLVNNLGS--GRED 702 dAivlDdAslFnHedslgLELlhkeleaPLLppRvySvENHqLYqsdRRR dAivlDdA++FnHe+slgLEL+h+e++aPLLppRvyS+ENHq ++++RRR KIAA0768 703 DAIVLDDATSFNHEESLGLELIHEESDAPLLPPRVYSTENHQPHHYTRRR 752 iPkKvKPdeseSfvaeltaeadedlqSPnRDSLYtSmpnLrDsPsypess iP+ d+seSf+++lt+e++edlqSP+RDSLYtSmp L+++ ++++ KIAA0768 753 IPQ----DHSESFFPLLTNEHTEDLQSPHRDSLYTSMPTLAGVAATESVT 798 petqaEdLsPpppAkcGdeeDiYYkSmPPnLgARnHvHqLqtYYQvsRGs ++tq+E pppAkcGd+eD+YYkSm PnLg+RnHvHqL+tYYQ++RGs KIAA0768 799 TSTQTE----PPPAKCGDAEDVYYKSM-PNLGSRNHVHQLHTYYQLGRGS 843 sdGYivppnkeGtiPeGSSdvREGqmqLVTSL<-* sdG+ivppnk+Gt+PeGSS+ G+++LVTSL KIAA0768 844 SDGFIVPPNKDGTPPEGSSK---GPAHLVTSL 872 //