hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12220492/chunk_1/iprscan-20080502-12220492.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0763 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF01369.11.ls Sec7 domain 219.9 5.1e-63 1 PF01369.11.fs Sec7 domain 218.3 1.6e-62 1 PF00612.17.ls IQ calmodulin-binding motif 16.4 0.095 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF00612.17.ls 1/1 15 35 .. 1 21 [] 16.4 0.095 PF01369.11.ls 1/1 401 592 .. 1 221 [] 219.9 5.1e-63 PF01369.11.fs 1/1 404 592 .. 1 221 [] 218.3 1.6e-62 Alignments of top-scoring domains: PF00612.17.ls: domain 1 of 1, from 15 to 35: score 16.4, E = 0.095 *->rraaikIQaawRGylaRkryk<-* r+aa +IQ a+R y++ k+++ KIAA0763 15 RHAARTIQTAFRQYQMNKNFE 35 PF01369.11.ls: domain 1 of 1, from 401 to 592: score 219.9, E = 5.1e-63 *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle rk+ +g + FN kP kG + Li++g+++ ++p +A fLl KIAA0763 401 DVIRKRHYRIGLNLFNKKPEKGVQYLIERGFVP--DTPVGVAHFLL- 444 eteGLdKkaiGefLGe.nddfniqvLneFvkNlFdFtglpLdeALRlfLk +GL+ +iGefLG++ fn +vL+ v+ ++dF+ + LdeALR+f KIAA0763 445 QRKGLSRQMIGEFLGNrQKQFNRDVLDCVVD-EMDFSTMELDEALRKFQA 493 sFRLPGEaQkIdRileaFSerYiqcQyNpgv...fsnkkaEDdIecvqpd +R GEaQk +R++eaFS+rY+ c Npgv ++f n KIAA0763 494 HIRVQGEAQKVERLIEAFSQRYCIC--NPGVvrqFRNP------------ 529 aDsayvLsYSlIMLNTDLHNNpqVK.kKkikMTledFieNnrrdLREENE D+ ++L++++I+LNTD +p+VK+++ kM ledFi+N+r KIAA0763 530 -DTIFILAFAIILLNTDMY-SPNVKpER--KMKLEDFIKNLR-------- 567 YEELgindGgDlprefLtelYesIkneei<-* g++dG+D+pre L +Ye I++ e+ KIAA0763 568 ----GVDDGEDIPREMLMGIYERIRKREL 592 PF01369.11.fs: domain 1 of 1, from 404 to 592: score 218.3, E = 1.6e-62 *->lksrkkqliegrkkFNqkPkkGiedLiskglladdkdpqdiAkfLle rk+ +g + FN kP kG + Li++g+++ ++p +A fLl KIAA0763 404 ---RKRHYRIGLNLFNKKPEKGVQYLIERGFVP--DTPVGVAHFLL- 444 eteGLdKkaiGefLGe.nddfniqvLneFvkNlFdFtglpLdeALRlfLk +GL+ +iGefLG++ fn +vL+ v+ ++dF+ + LdeALR+f KIAA0763 445 QRKGLSRQMIGEFLGNrQKQFNRDVLDCVVD-EMDFSTMELDEALRKFQA 493 sFRLPGEaQkIdRileaFSerYiqcQyNpgv...fsnkkaEDdIecvqpd +R GEaQk +R++eaFS+rY+ c Npgv ++f n KIAA0763 494 HIRVQGEAQKVERLIEAFSQRYCIC--NPGVvrqFRNP------------ 529 aDsayvLsYSlIMLNTDLHNNpqVK.kKkikMTledFieNnrrdLREENE D+ ++L++++I+LNTD +p+VK+++ kM ledFi+N+r KIAA0763 530 -DTIFILAFAIILLNTDMY-SPNVKpER--KMKLEDFIKNLR-------- 567 YEELgindGgDlprefLtelYesIkneei<-* g++dG+D+pre L +Ye I++ e+ KIAA0763 568 ----GVDDGEDIPREMLMGIYERIRKREL 592 //