# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk04621.fasta.huge -Q ../query/KIAA0759.ptfa ./tmplib.23663 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA0759, 673 aa vs ./tmplib.23663 library 1986832 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 4.3884+/-0.0052; mu= 19.5569+/- 0.354 mean_var=101.2473+/-24.253, 0's: 0 Z-trim: 1 B-trim: 0 in 0/40 Lambda= 0.127463 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 38, opt: 26, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1194 ( 575 res) fg00908 ( 575) 161 40.3 0.00059 >>KIAA1194 ( 575 res) fg00908 (575 aa) initn: 337 init1: 111 opt: 161 Z-score: 162.9 bits: 40.3 E(): 0.00059 Smith-Waterman score: 357; 31.579% identity (57.895% similar) in 247 aa overlap (244-452:203-446) 220 230 240 250 260 270 KIAA07 VEIPYHEILWREWEDFSTQPDAQGLKAGDGPQFQFTLMSYNILAQDLMQQSSELYLHCHP : :..: ::.: . . .:: .: KIAA11 DNLSGTAKRITTEQPPPRSWIMLQEPDRTRPTALFSVMCYNVLCDKY--ATRQLYGYCPS 180 190 200 210 220 230 280 290 300 310 320 330 KIAA07 DILNWNYRFVNLMQEFQHWDPDILCLQEVQEDHYWEQLEPSLRMMGFTCFYKRRTGCKT- :::.:: ..::. . ::. ::::. ..:. . :. :.. :.. .. .: KIAA11 WALNWDYRKKAIIQEILSCNADIVSLQEVETEQYYSFFLVELKERGYNGFFSPKSRARTM 240 250 260 270 280 290 340 350 360 370 KIAA07 --------DGCAVCYKPTRFRLLCASPVEYFR------PGLE-LLNR----DNVGLVLLL ::::. .: .: :. ::. . : : .::: ::.:...:: KIAA11 SEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQLAMANSEGSEAMLNRVMTKDNIGVAVLL 300 310 320 330 340 350 380 390 400 410 420 KIAA07 QPLVPEGLGQVSVAP--------LCVANTHILYNPRRGDVKLAQMAILLAEV----DKVA . : :.. . : : . :::.:. ..:. .::::.: ..:.:: ::.. KIAA11 E-LRKESIEMPSGKPHLGTEKQLILVANAHMHWDPEYSDVKLVQTMMFLSEVKNIIDKAS 360 370 380 390 400 430 440 450 460 470 KIAA07 R------LSDGSHCPIILCGDLNSVPDSPLYNFIRDGELQYHGMPAWKVSGQEDFSHQLY : :.. . :..::.::::.::: . ... : KIAA11 RNLKSSVLGEFGTIPLVLCADLNSLPDSGVVEYLSTGGVETNHKDFKELRYNESLTNFSC 410 420 430 440 450 460 480 490 500 510 520 530 KIAA07 QRKLQAPLWPSSLGITDCCQYVTSCHPKRSERRKYGRDFLLRFRFCSIACQRPVGLVLME KIAA11 HGKNGTTNGRITHGFKLQSAYESGLMPYTNYTFDFKGIIDYIFYSKPQLNTLGILGPLDH 470 480 490 500 510 520 673 residues in 1 query sequences 1986832 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:14:56 2008 done: Thu Dec 18 15:14:56 2008 Total Scan time: 0.530 Total Display time: 0.020 Function used was FASTA [version 34.26.5 April 26, 2007]