hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080502/iprscan-20080502-12081663/chunk_1/iprscan-20080502-12081663.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA0755 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF04811.5.ls Sec23/Sec24 trunk domain 437.5 1.7e-128 1 PF04811.5.fs Sec23/Sec24 trunk domain 435.6 6.1e-128 1 PF04815.5.fs Sec23/Sec24 helical domain 152.9 2.6e-44 1 PF04815.5.ls Sec23/Sec24 helical domain 154.9 2e-43 1 PF08033.2.fs Sec23/Sec24 beta-sandwich domain 131.3 4.6e-40 2 PF08033.2.ls Sec23/Sec24 beta-sandwich domain 126.8 5.5e-35 1 PF00626.12.fs Gelsolin repeat 70.1 1.7e-19 1 PF04810.5.ls Sec23/Sec24 zinc finger 74.6 2.9e-19 1 PF04810.5.fs Sec23/Sec24 zinc finger 72.6 6.3e-19 1 PF00626.12.ls Gelsolin repeat 71.9 1.9e-18 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF04810.5.fs 1/1 420 459 .. 1 42 [] 72.6 6.3e-19 PF04810.5.ls 1/1 420 459 .. 1 42 [] 74.6 2.9e-19 PF04811.5.fs 1/1 498 745 .. 1 281 [] 435.6 6.1e-128 PF04811.5.ls 1/1 498 745 .. 1 281 [] 437.5 1.7e-128 PF08033.2.ls 1/1 747 831 .. 1 106 [] 126.8 5.5e-35 PF08033.2.fs 2/2 747 831 .. 1 106 [] 125.0 3.9e-38 PF04815.5.fs 1/1 843 946 .. 1 108 [] 152.9 2.6e-44 PF04815.5.ls 1/1 843 946 .. 1 108 [] 154.9 2e-43 PF00626.12.fs 1/1 960 1035 .. 1 96 [] 70.1 1.7e-19 PF00626.12.ls 1/1 960 1035 .. 1 96 [] 71.9 1.9e-18 Alignments of top-scoring domains: PF04810.5.fs: domain 1 of 1, from 420 to 459: score 72.6, E = 6.3e-19 *->dPvRCskrrCrAYlNPfcqfddrarrWqCnfCgnrNdvPpdY<-* +PvRC +rC+AY++Pf+qf++++rr+qC fC+++NdvPp Y KIAA0755 420 GPVRC--NRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFY 459 PF04810.5.ls: domain 1 of 1, from 420 to 459: score 74.6, E = 2.9e-19 *->dPvRCskrrCrAYlNPfcqfddrarrWqCnfCgnrNdvPpdY<-* +PvRC +rC+AY++Pf+qf++++rr+qC fC+++NdvPp Y KIAA0755 420 GPVRC--NRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFY 459 PF04811.5.fs: domain 1 of 1, from 498 to 745: score 435.6, E = 6.1e-128 *->PqPPvFlFvIDVSynAiksGlLaalkesLkqsLdlLPng....dpra P PP+F+F+IDVSy++ik+Gl+++ +e+Lk++L+++P++++++++ + KIAA0755 498 PNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEeqeeTSAI 544 lVGfITfDstvHFynlssslcsKsYVFrqpkmlvvsDlqdmFGLgsavrp +VGfIT+++++HF+n++s+l +qp+m+vv D+ ++F KIAA0755 545 RVGFITYNKVLHFFNVKSNL-------AQPQMMVVTDVGEVF-------- 579 sssggAgngllPlpadrlLvplsecrqvledLLeqLPkDmFpvtagkrpe +Pl+ d++Lv+++e++ v+++LL+q+P mF+++ ++e KIAA0755 580 ----------VPLL-DGFLVNYQESQSVIHNLLDQIPD-MFADS--NENE 615 ralGpALqaAflLLkavfpntGGkImvFqggLPTvGpGGkLksrldpPiR +++ +++qa++++Lka++ ++Gk+++F+++LPT++++GkLk+r+d KIAA0755 616 TVFASVIQAGMEALKAAD--CPGKLFIFHSSLPTAEAPGKLKNRDDK--- 660 shhdtdKdkaklvkkadkFYksLAkecvaqGhsVDLFafsldYvDvAtlg ++++tdK+k+ ++++++ Y+sLAk+cva+G+sV LF+f+++YvDvA+lg KIAA0755 661 KLVNTDKEKILFQPQTN-VYDSLAKDCVAHGCSVTLFLFPSQYVDVASLG 709 qlsrlTGGqvylypsFqytapvDtskFkqdlkRyftrd<-* +++lTGG +y+y +Fq ++ D + F++dl+++++++ KIAA0755 710 LVPQLTGGTLYKYNNFQ--MHLDRQQFLNDLRNDIEKK 745 PF04811.5.ls: domain 1 of 1, from 498 to 745: score 437.5, E = 1.7e-128 *->PqPPvFlFvIDVSynAiksGlLaalkesLkqsLdlLPng....dpra P PP+F+F+IDVSy++ik+Gl+++ +e+Lk++L+++P++++++++ + KIAA0755 498 PNPPAFIFMIDVSYSNIKNGLVKLICEELKTMLEKIPKEeqeeTSAI 544 lVGfITfDstvHFynlssslcsKsYVFrqpkmlvvsDlqdmFGLgsavrp +VGfIT+++++HF+n++s+l +qp+m+vv D+ ++F KIAA0755 545 RVGFITYNKVLHFFNVKSNL-------AQPQMMVVTDVGEVF-------- 579 sssggAgngllPlpadrlLvplsecrqvledLLeqLPkDmFpvtagkrpe +Pl+ d++Lv+++e++ v+++LL+q+P mF+++ ++e KIAA0755 580 ----------VPLL-DGFLVNYQESQSVIHNLLDQIPD-MFADS--NENE 615 ralGpALqaAflLLkavfpntGGkImvFqggLPTvGpGGkLksrldpPiR +++ +++qa++++Lka++ ++Gk+++F+++LPT++++GkLk+r+d KIAA0755 616 TVFASVIQAGMEALKAAD--CPGKLFIFHSSLPTAEAPGKLKNRDDK--- 660 shhdtdKdkaklvkkadkFYksLAkecvaqGhsVDLFafsldYvDvAtlg ++++tdK+k+ ++++++ Y+sLAk+cva+G+sV LF+f+++YvDvA+lg KIAA0755 661 KLVNTDKEKILFQPQTN-VYDSLAKDCVAHGCSVTLFLFPSQYVDVASLG 709 qlsrlTGGqvylypsFqytapvDtskFkqdlkRyftrd<-* +++lTGG +y+y +Fq ++ D + F++dl+++++++ KIAA0755 710 LVPQLTGGTLYKYNNFQ--MHLDRQQFLNDLRNDIEKK 745 PF08033.2.ls: domain 1 of 1, from 747 to 831: score 126.8, E = 5.5e-35 *->gfnAvlrVRtSkglkisgfiGnffsrnkKapsVsdteIGiGgTdlwk gf+A +rVRtS+g + ++f+G + ++ ++ ++++ KIAA0755 747 GFDAIMRVRTSTGFRATDFFGGILMN-------NT--------TDVE 778 lpsldpdqsyavefdiddklktpipqdrkqdvyfQfatlYthssGerRiR ++++d+d++++vef++ddkl+ ++ + +Q+a+lYt++sG+rR+R KIAA0755 779 MAAIDCDKAVTVEFKHDDKLSE------DSGALIQCAVLYTTISGQRRLR 822 VtTlalpvt<-* +++l l+++ KIAA0755 823 IHNLGLNCS 831 PF08033.2.fs: domain 2 of 2, from 747 to 831: score 125.0, E = 3.9e-38 *->gfnAvlrVRtSkglkisgfiGnffsrnkKapsVsdteIGiGgTdlwk gf+A +rVRtS+g + ++f+G + ++ ++ ++++ KIAA0755 747 GFDAIMRVRTSTGFRATDFFGGILMN-------NT--------TDVE 778 lpsldpdqsyavefdiddklktpipqdrkqdvyfQfatlYthssGerRiR ++++d+d++++vef++ddkl+ ++ + +Q+a+lYt++sG+rR+R KIAA0755 779 MAAIDCDKAVTVEFKHDDKLSE------DSGALIQCAVLYTTISGQRRLR 822 VtTlalpvt<-* +++l l+++ KIAA0755 823 IHNLGLNCS 831 PF04815.5.fs: domain 1 of 1, from 843 to 946: score 152.9, E = 2.6e-44 *->qeAiavlmAklAvekaltesslkdardwldnalidiLaaYrkncask ++A+++++Ak A++ +l+ ++lk +r+ l+n+++++La+Yrkncas+ KIAA0755 843 TDALINFFAKSAFKAVLH-QPLKVIREILVNQTAHMLACYRKNCASP 888 ndpsqliLpecasLkLlPlymlaLlKspalrvgatnnslDeRayarnllr + +sqliLp+ s+k lP+ym++LlK+++l ++ +++s+DeRay+r+l++ KIAA0755 889 SAASQLILPD--SMKVLPVYMNCLLKNCVLLSR-PEISTDERAYQRQLVM 935 slpldqllkmi<-* +++++++ +++ KIAA0755 936 TMGVADSQLFF 946 PF04815.5.ls: domain 1 of 1, from 843 to 946: score 154.9, E = 2e-43 *->qeAiavlmAklAvekaltesslkdardwldnalidiLaaYrkncask ++A+++++Ak A++ +l+ ++lk +r+ l+n+++++La+Yrkncas+ KIAA0755 843 TDALINFFAKSAFKAVLH-QPLKVIREILVNQTAHMLACYRKNCASP 888 ndpsqliLpecasLkLlPlymlaLlKspalrvgatnnslDeRayarnllr + +sqliLp+ s+k lP+ym++LlK+++l ++ +++s+DeRay+r+l++ KIAA0755 889 SAASQLILPD--SMKVLPVYMNCLLKNCVLLSR-PEISTDERAYQRQLVM 935 slpldqllkmi<-* +++++++ +++ KIAA0755 936 TMGVADSQLFF 946 PF00626.12.fs: domain 1 of 1, from 960 to 1035: score 70.1, E = 1.7e-19 *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyhiflWvGkkssqWR + lp++v++s + l++++++LL ng h flW+G ss+ KIAA0755 960 STMLPAAVRCSESRLSEEGIFLLANGL------HMFLWLG-VSSP-- 997 KagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparFl< +e++++ +++ ++ a+i+td++ lp+v + + ++++++++ KIAA0755 998 -------PELIQGIFNVPSF---AHINTDMTLLPEVGN-PYSQQLRMIM 1035 -* KIAA0755 - - PF00626.12.ls: domain 1 of 1, from 960 to 1035: score 71.9, E = 1.9e-18 *->nfvlpppvplsqeslnsgdcyLLDngfkgglnyhiflWvGkkssqWR + lp++v++s + l++++++LL ng h flW+G ss+ KIAA0755 960 STMLPAAVRCSESRLSEEGIFLLANGL------HMFLWLG-VSSP-- 997 KagYhdPdeklaaallaqelddaaqistdrfplpvvdrvvqgkeparFl< +e++++ +++ ++ a+i+td++ lp+v + + ++++++++ KIAA0755 998 -------PELIQGIFNVPSF---AHINTDMTLLPEVGN-PYSQQLRMIM 1035 -* KIAA0755 - - //